Strain Fitness in Escherichia coli BW25113 around b1433

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsQ and b1433 are separated by 39 nucleotidesb1433 and ydcN are separated by 91 nucleotidesydcN and ydcP are separated by 72 nucleotides b1432: insQ - IS609 transposase B (RefSeq), at 1,501,741 to 1,502,889 insQ b1433: b1433 - putative membrane transport protein (VIMSS), at 1,502,929 to 1,504,104 b1433 b1434: ydcN - predicted DNA-binding transcriptional regulator (NCBI), at 1,504,196 to 1,504,732 ydcN b1435: ydcP - putative collagenase (VIMSS), at 1,504,805 to 1,506,766 ydcP Position (kb) 1502 1503 1504 1505Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1501.929 kb on + strand, within insQat 1502.154 kb on + strand, within insQat 1502.160 kb on + strand, within insQat 1502.263 kb on + strand, within insQat 1502.469 kb on + strand, within insQat 1502.664 kb on + strand, within insQat 1502.664 kb on + strand, within insQat 1502.809 kb on + strandat 1502.835 kb on - strandat 1503.340 kb on - strand, within b1433at 1503.447 kb on + strand, within b1433at 1503.447 kb on + strand, within b1433at 1503.479 kb on - strand, within b1433at 1503.479 kb on - strand, within b1433at 1503.536 kb on + strand, within b1433at 1503.536 kb on + strand, within b1433at 1503.832 kb on + strand, within b1433at 1503.890 kb on - strand, within b1433at 1503.890 kb on - strand, within b1433at 1504.026 kb on + strandat 1504.588 kb on + strand, within ydcNat 1504.607 kb on - strand, within ydcNat 1504.721 kb on - strandat 1504.837 kb on - strandat 1504.884 kb on + strandat 1505.058 kb on + strand, within ydcPat 1505.064 kb on - strand, within ydcPat 1505.068 kb on + strand, within ydcPat 1505.079 kb on + strand, within ydcP

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,501,929 + insQ b1432 0.16 +0.3
1,502,154 + insQ b1432 0.36 +0.1
1,502,160 + insQ b1432 0.36 +0.5
1,502,263 + insQ b1432 0.45 +0.1
1,502,469 + insQ b1432 0.63 +0.0
1,502,664 + insQ b1432 0.80 -1.4
1,502,664 + insQ b1432 0.80 +0.1
1,502,809 + +0.1
1,502,835 - +0.2
1,503,340 - b1433 b1433 0.35 +0.2
1,503,447 + b1433 b1433 0.44 +3.7
1,503,447 + b1433 b1433 0.44 +0.5
1,503,479 - b1433 b1433 0.47 -1.2
1,503,479 - b1433 b1433 0.47 +0.6
1,503,536 + b1433 b1433 0.52 +1.0
1,503,536 + b1433 b1433 0.52 +2.2
1,503,832 + b1433 b1433 0.77 +0.1
1,503,890 - b1433 b1433 0.82 +0.8
1,503,890 - b1433 b1433 0.82 +0.4
1,504,026 + -0.0
1,504,588 + ydcN b1434 0.73 -0.6
1,504,607 - ydcN b1434 0.77 +0.3
1,504,721 - +0.7
1,504,837 - +0.7
1,504,884 + -1.8
1,505,058 + ydcP b1435 0.13 -0.2
1,505,064 - ydcP b1435 0.13 +0.4
1,505,068 + ydcP b1435 0.13 -0.2
1,505,079 + ydcP b1435 0.14 +0.3

Or see this region's nucleotide sequence