Strain Fitness in Agrobacterium fabrum C58 around Atu3069

Experiment: LB_arabidopsis_leaf

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3067 and Atu3068 are separated by 9 nucleotidesAtu3068 and Atu3069 are separated by 24 nucleotidesAtu3069 and Atu3070 are separated by 14 nucleotides Atu3067: Atu3067 - hypothetical protein, at 69,825 to 70,595 Atu3067 Atu3068: Atu3068 - ribokinase, at 70,605 to 71,501 Atu3068 Atu3069: Atu3069 - hypothetical protein, at 71,526 to 72,368 Atu3069 Atu3070: Atu3070 - allantoate amidohydrolase, at 72,383 to 73,624 Atu3070 Position (kb) 71 72 73Strain fitness (log2 ratio) -1 0 1at 70.603 kb on + strandat 70.603 kb on + strandat 70.603 kb on + strandat 70.626 kb on + strandat 70.637 kb on - strandat 70.655 kb on - strandat 70.744 kb on - strand, within Atu3068at 70.786 kb on + strand, within Atu3068at 70.851 kb on + strand, within Atu3068at 70.854 kb on - strand, within Atu3068at 70.933 kb on + strand, within Atu3068at 70.940 kb on + strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 71.017 kb on + strand, within Atu3068at 71.025 kb on - strand, within Atu3068at 71.099 kb on + strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.258 kb on + strand, within Atu3068at 71.303 kb on - strand, within Atu3068at 71.331 kb on + strand, within Atu3068at 71.442 kb on - strandat 71.460 kb on + strandat 71.526 kb on - strandat 71.667 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.781 kb on + strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.930 kb on - strand, within Atu3069at 71.991 kb on + strand, within Atu3069at 71.993 kb on + strand, within Atu3069at 71.998 kb on + strand, within Atu3069at 72.003 kb on + strand, within Atu3069at 72.053 kb on - strand, within Atu3069at 72.066 kb on - strand, within Atu3069at 72.208 kb on + strand, within Atu3069at 72.259 kb on - strand, within Atu3069at 72.261 kb on + strand, within Atu3069at 72.289 kb on - strandat 72.306 kb on - strandat 72.371 kb on - strandat 72.432 kb on + strandat 72.440 kb on - strandat 72.450 kb on - strandat 72.493 kb on + strandat 72.624 kb on + strand, within Atu3070at 72.697 kb on + strand, within Atu3070at 72.782 kb on + strand, within Atu3070at 72.841 kb on - strand, within Atu3070at 72.975 kb on + strand, within Atu3070at 72.983 kb on - strand, within Atu3070at 73.226 kb on + strand, within Atu3070at 73.239 kb on - strand, within Atu3070at 73.261 kb on + strand, within Atu3070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf
remove
70,603 + +0.5
70,603 + +0.4
70,603 + +1.0
70,626 + -0.2
70,637 - -0.0
70,655 - +0.1
70,744 - Atu3068 0.15 +0.5
70,786 + Atu3068 0.20 -0.1
70,851 + Atu3068 0.27 -0.1
70,854 - Atu3068 0.28 +0.3
70,933 + Atu3068 0.37 +0.4
70,940 + Atu3068 0.37 +0.8
70,953 - Atu3068 0.39 +0.9
70,953 - Atu3068 0.39 +0.6
71,017 + Atu3068 0.46 +0.8
71,025 - Atu3068 0.47 +0.3
71,099 + Atu3068 0.55 +0.1
71,144 - Atu3068 0.60 -0.6
71,144 - Atu3068 0.60 -1.7
71,258 + Atu3068 0.73 +0.4
71,303 - Atu3068 0.78 +1.2
71,331 + Atu3068 0.81 +0.5
71,442 - +1.2
71,460 + +0.3
71,526 - +0.6
71,667 + Atu3069 0.17 -0.4
71,736 + Atu3069 0.25 +0.6
71,736 + Atu3069 0.25 +1.1
71,736 + Atu3069 0.25 +0.3
71,781 + Atu3069 0.30 +1.1
71,789 - Atu3069 0.31 +0.7
71,789 - Atu3069 0.31 +0.2
71,901 - Atu3069 0.44 +1.1
71,901 - Atu3069 0.44 +0.2
71,930 - Atu3069 0.48 +0.3
71,991 + Atu3069 0.55 +0.3
71,993 + Atu3069 0.55 +0.4
71,998 + Atu3069 0.56 +0.1
72,003 + Atu3069 0.57 +0.7
72,053 - Atu3069 0.63 +0.3
72,066 - Atu3069 0.64 +0.3
72,208 + Atu3069 0.81 +0.3
72,259 - Atu3069 0.87 +0.6
72,261 + Atu3069 0.87 +1.1
72,289 - +0.6
72,306 - +1.2
72,371 - +1.1
72,432 + +1.1
72,440 - -0.3
72,450 - +0.9
72,493 + +0.6
72,624 + Atu3070 0.19 +0.7
72,697 + Atu3070 0.25 +0.6
72,782 + Atu3070 0.32 +0.3
72,841 - Atu3070 0.37 -0.4
72,975 + Atu3070 0.48 +0.3
72,983 - Atu3070 0.48 +0.4
73,226 + Atu3070 0.68 +0.3
73,239 - Atu3070 0.69 +0.9
73,261 + Atu3070 0.71 +0.8

Or see this region's nucleotide sequence