Experiment: LB_arabidopsis_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0950 and Atu8088 are separated by 210 nucleotides Atu8088 and Atu0951 are separated by 54 nucleotides
Atu0950: Atu0950 - hypothetical protein, at 938,312 to 939,976
Atu0950
Atu8088: Atu8088 - hypothetical protein, at 940,187 to 940,711
Atu8088
Atu0951: Atu0951 - large terminase phage packaging protein, at 940,766 to 941,974
Atu0951
Position (kb) 940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 939.215 kb on - strand, within Atu0950 at 939.378 kb on - strand, within Atu0950 at 939.427 kb on - strand, within Atu0950 at 939.500 kb on - strand, within Atu0950 at 939.635 kb on - strand, within Atu0950 at 939.773 kb on - strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.775 kb on + strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.783 kb on - strand, within Atu0950 at 939.824 kb on - strand at 939.862 kb on + strand at 939.874 kb on + strand at 939.878 kb on + strand at 939.902 kb on + strand at 939.905 kb on - strand at 939.963 kb on - strand at 940.014 kb on + strand at 940.022 kb on - strand at 940.131 kb on - strand at 940.186 kb on + strand at 940.216 kb on + strand at 940.219 kb on + strand at 940.219 kb on + strand at 940.224 kb on - strand at 940.375 kb on - strand, within Atu8088 at 940.450 kb on + strand, within Atu8088 at 940.458 kb on - strand, within Atu8088 at 940.469 kb on + strand, within Atu8088 at 940.673 kb on - strand at 940.690 kb on - strand at 940.714 kb on - strand at 940.754 kb on + strand at 940.762 kb on - strand at 940.762 kb on - strand at 940.807 kb on - strand at 940.819 kb on + strand at 940.820 kb on - strand at 940.891 kb on - strand, within Atu0951 at 940.919 kb on - strand, within Atu0951 at 940.919 kb on - strand, within Atu0951 at 940.938 kb on + strand, within Atu0951 at 940.951 kb on - strand, within Atu0951 at 941.135 kb on - strand, within Atu0951 at 941.216 kb on + strand, within Atu0951 at 941.318 kb on - strand, within Atu0951 at 941.340 kb on - strand, within Atu0951 at 941.430 kb on - strand, within Atu0951 at 941.492 kb on + strand, within Atu0951 at 941.594 kb on - strand, within Atu0951 at 941.604 kb on - strand, within Atu0951 at 941.606 kb on + strand, within Atu0951
Per-strain Table
Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf remove 939,215 - Atu0950 0.54 -0.3 939,378 - Atu0950 0.64 +0.6 939,427 - Atu0950 0.67 +0.1 939,500 - Atu0950 0.71 -0.4 939,635 - Atu0950 0.79 +1.3 939,773 - Atu0950 0.88 -0.0 939,775 + Atu0950 0.88 +1.0 939,775 + Atu0950 0.88 +1.5 939,775 + Atu0950 0.88 -0.2 939,775 + Atu0950 0.88 -0.0 939,775 + Atu0950 0.88 +0.1 939,783 - Atu0950 0.88 -0.8 939,783 - Atu0950 0.88 +1.3 939,783 - Atu0950 0.88 +2.2 939,783 - Atu0950 0.88 +0.4 939,783 - Atu0950 0.88 -1.2 939,783 - Atu0950 0.88 -1.0 939,783 - Atu0950 0.88 -0.3 939,783 - Atu0950 0.88 -0.6 939,824 - -0.5 939,862 + +0.2 939,874 + -0.1 939,878 + +0.1 939,902 + -0.1 939,905 - +0.2 939,963 - +0.1 940,014 + +0.1 940,022 - -0.7 940,131 - +0.2 940,186 + +0.3 940,216 + -0.0 940,219 + -0.3 940,219 + -0.3 940,224 - -0.4 940,375 - Atu8088 0.36 +0.7 940,450 + Atu8088 0.50 -1.0 940,458 - Atu8088 0.52 -0.4 940,469 + Atu8088 0.54 -1.1 940,673 - +1.1 940,690 - -0.6 940,714 - -0.0 940,754 + -1.3 940,762 - -0.3 940,762 - +0.1 940,807 - +0.9 940,819 + +0.1 940,820 - -1.3 940,891 - Atu0951 0.10 +0.3 940,919 - Atu0951 0.13 +0.5 940,919 - Atu0951 0.13 -0.2 940,938 + Atu0951 0.14 -0.6 940,951 - Atu0951 0.15 +0.3 941,135 - Atu0951 0.31 -2.3 941,216 + Atu0951 0.37 -0.8 941,318 - Atu0951 0.46 -1.2 941,340 - Atu0951 0.47 -0.2 941,430 - Atu0951 0.55 +0.3 941,492 + Atu0951 0.60 -0.5 941,594 - Atu0951 0.68 -0.1 941,604 - Atu0951 0.69 -0.9 941,606 + Atu0951 0.69 +0.7
Or see this region's nucleotide sequence