Experiment: LB_arabidopsis_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5071 and Atu8046 are separated by 77 nucleotides Atu8046 and Atu5072 are separated by 121 nucleotides
Atu5071: Atu5071 - ABC transporter substrate binding protein (dipeptide), at 70,032 to 71,549
Atu5071
Atu8046: Atu8046 - hypothetical protein, at 71,627 to 71,779
Atu8046
Atu5072: Atu5072 - hypothetical protein, at 71,901 to 73,091
Atu5072
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 70.704 kb on + strand, within Atu5071 at 70.712 kb on - strand, within Atu5071 at 70.712 kb on - strand, within Atu5071 at 70.712 kb on - strand, within Atu5071 at 70.737 kb on - strand, within Atu5071 at 70.836 kb on + strand, within Atu5071 at 70.862 kb on - strand, within Atu5071 at 70.896 kb on - strand, within Atu5071 at 70.908 kb on - strand, within Atu5071 at 70.986 kb on - strand, within Atu5071 at 70.988 kb on + strand, within Atu5071 at 71.040 kb on + strand, within Atu5071 at 71.077 kb on - strand, within Atu5071 at 71.113 kb on + strand, within Atu5071 at 71.169 kb on - strand, within Atu5071 at 71.257 kb on + strand, within Atu5071 at 71.267 kb on + strand, within Atu5071 at 71.267 kb on + strand, within Atu5071 at 71.286 kb on + strand, within Atu5071 at 71.323 kb on - strand, within Atu5071 at 71.353 kb on - strand, within Atu5071 at 71.353 kb on - strand, within Atu5071 at 71.395 kb on + strand, within Atu5071 at 71.411 kb on + strand at 71.473 kb on + strand at 71.473 kb on + strand at 71.481 kb on - strand at 71.481 kb on - strand at 71.481 kb on - strand at 71.522 kb on - strand at 71.552 kb on + strand at 71.553 kb on + strand at 71.561 kb on + strand at 71.635 kb on - strand at 71.668 kb on - strand, within Atu8046 at 71.681 kb on - strand, within Atu8046 at 71.694 kb on + strand, within Atu8046 at 71.706 kb on - strand, within Atu8046 at 71.913 kb on - strand at 71.963 kb on + strand at 71.981 kb on - strand at 72.014 kb on - strand at 72.014 kb on - strand at 72.018 kb on - strand at 72.041 kb on - strand, within Atu5072 at 72.151 kb on + strand, within Atu5072 at 72.170 kb on + strand, within Atu5072 at 72.227 kb on + strand, within Atu5072 at 72.270 kb on - strand, within Atu5072 at 72.291 kb on - strand, within Atu5072 at 72.291 kb on - strand, within Atu5072 at 72.292 kb on + strand, within Atu5072 at 72.292 kb on + strand, within Atu5072 at 72.296 kb on - strand, within Atu5072 at 72.318 kb on - strand, within Atu5072 at 72.387 kb on - strand, within Atu5072 at 72.438 kb on + strand, within Atu5072 at 72.482 kb on + strand, within Atu5072 at 72.490 kb on - strand, within Atu5072 at 72.490 kb on - strand, within Atu5072 at 72.507 kb on - strand, within Atu5072 at 72.686 kb on - strand, within Atu5072
Per-strain Table
Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf remove 70,704 + Atu5071 0.44 -1.4 70,712 - Atu5071 0.45 -1.3 70,712 - Atu5071 0.45 -1.9 70,712 - Atu5071 0.45 +0.4 70,737 - Atu5071 0.46 -0.5 70,836 + Atu5071 0.53 -0.5 70,862 - Atu5071 0.55 -0.4 70,896 - Atu5071 0.57 -1.4 70,908 - Atu5071 0.58 -0.6 70,986 - Atu5071 0.63 -0.0 70,988 + Atu5071 0.63 +0.1 71,040 + Atu5071 0.66 +0.5 71,077 - Atu5071 0.69 -0.0 71,113 + Atu5071 0.71 -2.1 71,169 - Atu5071 0.75 -0.9 71,257 + Atu5071 0.81 +0.0 71,267 + Atu5071 0.81 -0.6 71,267 + Atu5071 0.81 +0.1 71,286 + Atu5071 0.83 -0.5 71,323 - Atu5071 0.85 +0.0 71,353 - Atu5071 0.87 -0.1 71,353 - Atu5071 0.87 +0.0 71,395 + Atu5071 0.90 +0.1 71,411 + +1.3 71,473 + -0.5 71,473 + +1.1 71,481 - +0.6 71,481 - -0.4 71,481 - -0.3 71,522 - +1.2 71,552 + +1.1 71,553 + -0.3 71,561 + -0.3 71,635 - -0.1 71,668 - Atu8046 0.27 -0.8 71,681 - Atu8046 0.35 -0.7 71,694 + Atu8046 0.44 -0.5 71,706 - Atu8046 0.52 +0.9 71,913 - -0.7 71,963 + +0.5 71,981 - -0.4 72,014 - +0.2 72,014 - -0.2 72,018 - +0.2 72,041 - Atu5072 0.12 -0.3 72,151 + Atu5072 0.21 +0.3 72,170 + Atu5072 0.23 -0.4 72,227 + Atu5072 0.27 -0.7 72,270 - Atu5072 0.31 -0.5 72,291 - Atu5072 0.33 -0.4 72,291 - Atu5072 0.33 -0.7 72,292 + Atu5072 0.33 +1.1 72,292 + Atu5072 0.33 -0.3 72,296 - Atu5072 0.33 -0.2 72,318 - Atu5072 0.35 -0.9 72,387 - Atu5072 0.41 +0.1 72,438 + Atu5072 0.45 -0.6 72,482 + Atu5072 0.49 +0.2 72,490 - Atu5072 0.49 -0.0 72,490 - Atu5072 0.49 +0.8 72,507 - Atu5072 0.51 -0.4 72,686 - Atu5072 0.66 +0.3
Or see this region's nucleotide sequence