Experiment: LB_arabidopsis_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4113 and Atu4114 are separated by 62 nucleotides Atu4114 and Atu4115 overlap by 4 nucleotides Atu4115 and Atu4116 are separated by 3 nucleotides
Atu4113: Atu4113 - dipeptide ABC transporter substrate-binding protein, at 1,232,024 to 1,233,628
Atu4113
Atu4114: Atu4114 - dipeptide ABC transporter permease, at 1,233,691 to 1,234,698
Atu4114
Atu4115: Atu4115 - dipeptide ABC transporter permease, at 1,234,695 to 1,235,609
Atu4115
Atu4116: Atu4116 - dipeptide ABC transporter ATPase, at 1,235,613 to 1,236,452
Atu4116
Position (kb) 1233
1234
1235 Strain fitness (log2 ratio) -2
-1
0
1 at 1232.699 kb on - strand, within Atu4113 at 1232.713 kb on + strand, within Atu4113 at 1232.831 kb on - strand, within Atu4113 at 1232.831 kb on - strand, within Atu4113 at 1232.887 kb on - strand, within Atu4113 at 1232.929 kb on - strand, within Atu4113 at 1232.948 kb on + strand, within Atu4113 at 1232.956 kb on - strand, within Atu4113 at 1232.956 kb on - strand, within Atu4113 at 1232.989 kb on - strand, within Atu4113 at 1232.990 kb on + strand, within Atu4113 at 1233.038 kb on + strand, within Atu4113 at 1233.162 kb on + strand, within Atu4113 at 1233.204 kb on - strand, within Atu4113 at 1233.358 kb on - strand, within Atu4113 at 1233.366 kb on - strand, within Atu4113 at 1233.563 kb on - strand at 1233.751 kb on + strand at 1233.788 kb on + strand at 1233.909 kb on + strand, within Atu4114 at 1234.193 kb on + strand, within Atu4114 at 1234.229 kb on + strand, within Atu4114 at 1234.229 kb on + strand, within Atu4114 at 1234.302 kb on + strand, within Atu4114 at 1234.404 kb on + strand, within Atu4114 at 1234.404 kb on + strand, within Atu4114 at 1234.478 kb on + strand, within Atu4114 at 1234.511 kb on + strand, within Atu4114 at 1234.526 kb on + strand, within Atu4114 at 1234.589 kb on + strand, within Atu4114 at 1234.597 kb on - strand, within Atu4114 at 1234.600 kb on - strand at 1234.632 kb on - strand at 1234.669 kb on - strand at 1234.669 kb on - strand at 1234.740 kb on + strand at 1234.880 kb on + strand, within Atu4115 at 1234.920 kb on + strand, within Atu4115 at 1234.995 kb on + strand, within Atu4115 at 1235.042 kb on + strand, within Atu4115 at 1235.258 kb on - strand, within Atu4115 at 1235.287 kb on - strand, within Atu4115 at 1235.324 kb on + strand, within Atu4115 at 1235.332 kb on - strand, within Atu4115 at 1235.347 kb on + strand, within Atu4115 at 1235.355 kb on - strand, within Atu4115 at 1235.431 kb on + strand, within Atu4115 at 1235.505 kb on + strand, within Atu4115 at 1235.566 kb on - strand at 1235.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf remove 1,232,699 - Atu4113 0.42 -0.5 1,232,713 + Atu4113 0.43 -0.2 1,232,831 - Atu4113 0.50 -0.1 1,232,831 - Atu4113 0.50 -1.4 1,232,887 - Atu4113 0.54 +0.6 1,232,929 - Atu4113 0.56 -0.2 1,232,948 + Atu4113 0.58 -0.2 1,232,956 - Atu4113 0.58 -0.4 1,232,956 - Atu4113 0.58 +0.0 1,232,989 - Atu4113 0.60 +0.9 1,232,990 + Atu4113 0.60 -0.1 1,233,038 + Atu4113 0.63 -0.3 1,233,162 + Atu4113 0.71 -0.3 1,233,204 - Atu4113 0.74 +0.6 1,233,358 - Atu4113 0.83 -0.3 1,233,366 - Atu4113 0.84 -1.0 1,233,563 - -0.4 1,233,751 + +1.0 1,233,788 + +1.0 1,233,909 + Atu4114 0.22 -0.8 1,234,193 + Atu4114 0.50 -0.0 1,234,229 + Atu4114 0.53 -2.1 1,234,229 + Atu4114 0.53 -0.8 1,234,302 + Atu4114 0.61 +1.2 1,234,404 + Atu4114 0.71 -0.2 1,234,404 + Atu4114 0.71 -1.5 1,234,478 + Atu4114 0.78 -1.4 1,234,511 + Atu4114 0.81 +0.5 1,234,526 + Atu4114 0.83 -1.0 1,234,589 + Atu4114 0.89 -0.6 1,234,597 - Atu4114 0.90 -0.3 1,234,600 - -0.4 1,234,632 - -0.5 1,234,669 - +0.7 1,234,669 - -1.0 1,234,740 + -0.0 1,234,880 + Atu4115 0.20 -0.7 1,234,920 + Atu4115 0.25 -0.5 1,234,995 + Atu4115 0.33 +0.6 1,235,042 + Atu4115 0.38 +0.9 1,235,258 - Atu4115 0.62 +0.2 1,235,287 - Atu4115 0.65 -0.9 1,235,324 + Atu4115 0.69 -0.1 1,235,332 - Atu4115 0.70 +0.4 1,235,347 + Atu4115 0.71 -0.4 1,235,355 - Atu4115 0.72 -0.4 1,235,431 + Atu4115 0.80 +0.5 1,235,505 + Atu4115 0.89 -0.1 1,235,566 - -2.5 1,235,677 - -1.0
Or see this region's nucleotide sequence