Experiment: LB_arabidopsis_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3392 and Atu3393 are separated by 176 nucleotides Atu3393 and Atu3394 overlap by 4 nucleotides Atu3394 and Atu3395 overlap by 4 nucleotides
Atu3392: Atu3392 - methyltransferase, at 436,675 to 437,499
Atu3392
Atu3393: Atu3393 - pseudoazurin, at 437,676 to 438,116
Atu3393
Atu3394: Atu3394 - iron ABC transporter ATPase, at 438,113 to 438,913
Atu3394
Atu3395: Atu3395 - iron (III ABC transporter permease ABC transporter permease, at 438,910 to 439,863
Atu3395
Position (kb) 438
439 Strain fitness (log2 ratio) -2
-1
0
1 at 437.229 kb on - strand, within Atu3392 at 437.451 kb on + strand at 437.451 kb on + strand at 437.488 kb on + strand at 437.496 kb on - strand at 437.543 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.551 kb on - strand at 437.607 kb on - strand at 437.609 kb on + strand at 437.612 kb on - strand at 437.617 kb on - strand at 437.617 kb on - strand at 437.732 kb on - strand, within Atu3393 at 437.781 kb on - strand, within Atu3393 at 437.793 kb on + strand, within Atu3393 at 437.808 kb on - strand, within Atu3393 at 438.070 kb on + strand, within Atu3393 at 438.088 kb on - strand at 438.107 kb on - strand at 438.292 kb on + strand, within Atu3394 at 438.784 kb on - strand, within Atu3394 at 438.801 kb on - strand, within Atu3394 at 438.988 kb on - strand at 439.080 kb on - strand, within Atu3395 at 439.083 kb on + strand, within Atu3395 at 439.089 kb on + strand, within Atu3395 at 439.187 kb on + strand, within Atu3395 at 439.207 kb on - strand, within Atu3395 at 439.258 kb on + strand, within Atu3395 at 439.274 kb on + strand, within Atu3395 at 439.377 kb on - strand, within Atu3395 at 439.480 kb on + strand, within Atu3395 at 439.507 kb on - strand, within Atu3395 at 439.682 kb on - strand, within Atu3395 at 439.742 kb on + strand, within Atu3395 at 439.742 kb on - strand, within Atu3395 at 439.754 kb on + strand, within Atu3395 at 439.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf remove 437,229 - Atu3392 0.67 -2.2 437,451 + -1.1 437,451 + +0.0 437,488 + +1.1 437,496 - +0.4 437,543 + +0.2 437,548 + +0.1 437,548 + -0.9 437,548 + -1.1 437,551 - +0.0 437,607 - +1.1 437,609 + -0.1 437,612 - -1.7 437,617 - -0.1 437,617 - -0.2 437,732 - Atu3393 0.13 +0.2 437,781 - Atu3393 0.24 +0.8 437,793 + Atu3393 0.27 +0.1 437,808 - Atu3393 0.30 -1.7 438,070 + Atu3393 0.89 -0.1 438,088 - -0.3 438,107 - -0.1 438,292 + Atu3394 0.22 -1.6 438,784 - Atu3394 0.84 -0.8 438,801 - Atu3394 0.86 -0.2 438,988 - -0.3 439,080 - Atu3395 0.18 -0.4 439,083 + Atu3395 0.18 -0.3 439,089 + Atu3395 0.19 +0.5 439,187 + Atu3395 0.29 +1.1 439,207 - Atu3395 0.31 -0.3 439,258 + Atu3395 0.36 -1.2 439,274 + Atu3395 0.38 -0.1 439,377 - Atu3395 0.49 +0.4 439,480 + Atu3395 0.60 +0.3 439,507 - Atu3395 0.63 +0.2 439,682 - Atu3395 0.81 -0.4 439,742 + Atu3395 0.87 +1.1 439,742 - Atu3395 0.87 +0.2 439,754 + Atu3395 0.88 +0.5 439,802 + -0.4
Or see this region's nucleotide sequence