Experiment: LB_arabidopsis_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3091 and Atu3092 are separated by 36 nucleotides Atu3092 and Atu3093 are separated by 96 nucleotides Atu3093 and Atu3094 are separated by 418 nucleotides
Atu3091: Atu3091 - hypothetical protein, at 97,368 to 98,270
Atu3091
Atu3092: Atu3092 - hypothetical protein, at 98,307 to 98,792
Atu3092
Atu3093: Atu3093 - transglycosylase, at 98,889 to 99,782
Atu3093
Atu3094: Atu3094 - methyl-accepting chemotaxis protein, at 100,201 to 101,985
Atu3094
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 97.925 kb on - strand, within Atu3091 at 97.964 kb on + strand, within Atu3091 at 97.970 kb on - strand, within Atu3091 at 97.972 kb on - strand, within Atu3091 at 98.205 kb on - strand at 98.330 kb on + strand at 98.338 kb on - strand at 98.353 kb on + strand at 98.484 kb on - strand, within Atu3092 at 98.509 kb on - strand, within Atu3092 at 98.514 kb on - strand, within Atu3092 at 98.519 kb on - strand, within Atu3092 at 98.519 kb on - strand, within Atu3092 at 98.622 kb on + strand, within Atu3092 at 98.659 kb on - strand, within Atu3092 at 98.664 kb on - strand, within Atu3092 at 98.733 kb on + strand, within Atu3092 at 98.886 kb on + strand at 98.916 kb on - strand at 98.916 kb on - strand at 98.918 kb on - strand at 99.079 kb on - strand, within Atu3093 at 99.111 kb on + strand, within Atu3093 at 99.226 kb on + strand, within Atu3093 at 99.441 kb on + strand, within Atu3093 at 99.450 kb on - strand, within Atu3093 at 99.473 kb on + strand, within Atu3093 at 99.479 kb on - strand, within Atu3093 at 99.488 kb on + strand, within Atu3093 at 99.488 kb on + strand, within Atu3093 at 99.499 kb on - strand, within Atu3093 at 99.499 kb on - strand, within Atu3093 at 99.512 kb on + strand, within Atu3093 at 99.515 kb on - strand, within Atu3093 at 99.521 kb on + strand, within Atu3093 at 99.537 kb on - strand, within Atu3093 at 99.697 kb on - strand at 99.779 kb on - strand at 99.779 kb on - strand at 99.790 kb on + strand at 100.017 kb on + strand at 100.085 kb on + strand at 100.093 kb on - strand at 100.095 kb on + strand at 100.117 kb on - strand at 100.218 kb on + strand at 100.318 kb on - strand at 100.323 kb on - strand at 100.332 kb on - strand at 100.352 kb on + strand at 100.474 kb on - strand, within Atu3094 at 100.634 kb on + strand, within Atu3094
Per-strain Table
Position Strand Gene LocusTag Fraction LB_arabidopsis_leaf remove 97,925 - Atu3091 0.62 +0.2 97,964 + Atu3091 0.66 +1.1 97,970 - Atu3091 0.67 -0.0 97,972 - Atu3091 0.67 +0.7 98,205 - +0.5 98,330 + +0.0 98,338 - -0.1 98,353 + +0.4 98,484 - Atu3092 0.36 +0.1 98,509 - Atu3092 0.42 +0.2 98,514 - Atu3092 0.43 +0.7 98,519 - Atu3092 0.44 -0.2 98,519 - Atu3092 0.44 +0.4 98,622 + Atu3092 0.65 +0.4 98,659 - Atu3092 0.72 -0.2 98,664 - Atu3092 0.73 +0.4 98,733 + Atu3092 0.88 +0.2 98,886 + -0.3 98,916 - -1.9 98,916 - +0.3 98,918 - +0.6 99,079 - Atu3093 0.21 +0.8 99,111 + Atu3093 0.25 +0.5 99,226 + Atu3093 0.38 -0.6 99,441 + Atu3093 0.62 +0.5 99,450 - Atu3093 0.63 +1.0 99,473 + Atu3093 0.65 -0.2 99,479 - Atu3093 0.66 +0.6 99,488 + Atu3093 0.67 +0.3 99,488 + Atu3093 0.67 -0.1 99,499 - Atu3093 0.68 +0.7 99,499 - Atu3093 0.68 +0.3 99,512 + Atu3093 0.70 +0.5 99,515 - Atu3093 0.70 -0.0 99,521 + Atu3093 0.71 +0.5 99,537 - Atu3093 0.72 +0.1 99,697 - +0.1 99,779 - +0.3 99,779 - -0.3 99,790 + +0.6 100,017 + -0.6 100,085 + +0.6 100,093 - -0.4 100,095 + +0.0 100,117 - +0.1 100,218 + +0.4 100,318 - +0.4 100,323 - +0.3 100,332 - +0.5 100,352 + -0.7 100,474 - Atu3094 0.15 +0.4 100,634 + Atu3094 0.24 +0.0
Or see this region's nucleotide sequence