Strain Fitness in Escherichia coli BW25113 around b4337
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,564,364 | - | yjiN | b4336 | 0.29 | -0.1 |
4,564,466 | + | yjiN | b4336 | 0.37 | -0.1 |
4,564,468 | + | yjiN | b4336 | 0.37 | +0.0 |
4,564,468 | + | yjiN | b4336 | 0.37 | +0.3 |
4,564,470 | + | yjiN | b4336 | 0.38 | -1.2 |
4,564,566 | + | yjiN | b4336 | 0.45 | -0.2 |
4,564,574 | - | yjiN | b4336 | 0.46 | -0.0 |
4,564,579 | - | yjiN | b4336 | 0.46 | -0.8 |
4,564,607 | + | yjiN | b4336 | 0.48 | +0.3 |
4,564,650 | + | yjiN | b4336 | 0.52 | -0.0 |
4,564,650 | + | yjiN | b4336 | 0.52 | +0.7 |
4,564,682 | - | yjiN | b4336 | 0.54 | -0.0 |
4,564,720 | + | yjiN | b4336 | 0.57 | -0.6 |
4,564,740 | + | yjiN | b4336 | 0.59 | +0.3 |
4,564,890 | - | yjiN | b4336 | 0.70 | +0.3 |
4,565,205 | - | +0.6 | |||
4,565,365 | + | -0.6 | |||
4,565,365 | + | +1.2 | |||
4,565,485 | - | yjiO | b4337 | 0.14 | -0.2 |
4,565,485 | - | yjiO | b4337 | 0.14 | -0.2 |
4,565,494 | - | yjiO | b4337 | 0.15 | -0.4 |
4,565,598 | + | yjiO | b4337 | 0.23 | +0.5 |
4,565,598 | + | yjiO | b4337 | 0.23 | +1.0 |
4,565,623 | + | yjiO | b4337 | 0.25 | -0.1 |
4,565,640 | + | yjiO | b4337 | 0.27 | -0.2 |
4,565,778 | - | yjiO | b4337 | 0.38 | +0.5 |
4,565,778 | - | yjiO | b4337 | 0.38 | +0.2 |
4,566,224 | + | yjiO | b4337 | 0.74 | -0.2 |
4,566,273 | - | yjiO | b4337 | 0.78 | +0.8 |
4,566,273 | - | yjiO | b4337 | 0.78 | -0.7 |
4,566,322 | - | yjiO | b4337 | 0.82 | -0.7 |
4,566,363 | - | yjiO | b4337 | 0.85 | -0.3 |
4,566,371 | + | yjiO | b4337 | 0.86 | +0.8 |
4,566,447 | + | +0.6 | |||
4,566,447 | + | +0.1 | |||
4,566,470 | + | -0.7 | |||
4,566,470 | + | -0.3 | |||
4,566,560 | - | +0.4 | |||
4,566,613 | + | -0.1 | |||
4,566,617 | + | +0.5 | |||
4,566,655 | + | +0.3 | |||
4,566,665 | + | -0.1 | |||
4,566,666 | + | -0.2 | |||
4,566,669 | + | +0.3 | |||
4,566,673 | + | +0.5 | |||
4,566,673 | + | -0.3 | |||
4,566,682 | + | -0.1 | |||
4,566,682 | + | -0.1 | |||
4,566,834 | + | -0.5 | |||
4,566,834 | + | +0.6 | |||
4,566,860 | - | -0.4 | |||
4,566,865 | + | +0.4 | |||
4,566,865 | - | +0.4 | |||
4,566,866 | + | +0.3 | |||
4,566,894 | + | +0.8 | |||
4,566,894 | + | +0.1 | |||
4,566,968 | + | +0.6 | |||
4,566,968 | + | +0.7 | |||
4,566,988 | - | -0.1 | |||
4,567,039 | + | +0.3 | |||
4,567,043 | - | -0.4 | |||
4,567,046 | - | -1.2 | |||
4,567,048 | - | -0.3 | |||
4,567,080 | + | -0.1 | |||
4,567,080 | + | +0.3 | |||
4,567,080 | + | -1.8 | |||
4,567,080 | + | -0.7 | |||
4,567,080 | + | -0.4 | |||
4,567,080 | + | -0.0 | |||
4,567,080 | + | -2.4 | |||
4,567,080 | + | -0.4 | |||
4,567,080 | + | +0.7 | |||
4,567,080 | + | -0.0 | |||
4,567,080 | + | +0.1 | |||
4,567,080 | + | -0.3 | |||
4,567,088 | - | -0.5 | |||
4,567,088 | - | +0.1 | |||
4,567,088 | - | +0.2 | |||
4,567,105 | + | +0.3 | |||
4,567,137 | + | yjiP | b4339 | 0.13 | +1.4 |
4,567,137 | + | yjiP | b4339 | 0.13 | +0.8 |
4,567,195 | + | yjiP | b4339 | 0.19 | -0.2 |
4,567,195 | + | yjiP | b4339 | 0.19 | +0.8 |
4,567,197 | + | yjiP | b4339 | 0.19 | -0.2 |
4,567,246 | - | yjiP | b4339 | 0.24 | +0.4 |
4,567,265 | + | yjiP | b4339 | 0.26 | +0.4 |
4,567,296 | - | yjiP | b4339 | 0.30 | +0.2 |
4,567,308 | + | yjiP | b4339 | 0.31 | +0.4 |
4,567,334 | + | yjiP | b4339 | 0.34 | -0.5 |
4,567,337 | + | yjiP | b4339 | 0.34 | -0.2 |
4,567,344 | + | yjiP | b4339 | 0.35 | +0.2 |
4,567,344 | + | yjiP | b4339 | 0.35 | +0.7 |
4,567,345 | - | yjiP | b4339 | 0.35 | -0.4 |
4,567,345 | - | yjiP | b4339 | 0.35 | +0.0 |
4,567,366 | - | yjiP | b4339 | 0.37 | +0.2 |
4,567,406 | + | yjiP | b4339 | 0.42 | -0.2 |
4,567,418 | + | yjiP | b4339 | 0.43 | +0.5 |
4,567,491 | + | yjiP | b4339 | 0.51 | +0.3 |
4,567,508 | + | yjiP | b4339 | 0.53 | +0.6 |
4,567,508 | + | yjiP | b4339 | 0.53 | -0.1 |
4,567,523 | + | yjiP | b4339 | 0.55 | -0.1 |
4,567,523 | + | yjiP | b4339 | 0.55 | -0.7 |
4,567,525 | + | yjiP | b4339 | 0.55 | +1.1 |
Or see this region's nucleotide sequence