Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8203 and Atu5175 are separated by 207 nucleotides Atu5175 and Atu5176 are separated by 1 nucleotides Atu5176 and Atu5177 are separated by 246 nucleotides
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Atu5175: Atu5175 - two component response regulator, at 171,553 to 172,227
Atu5175
Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578
Atu5176
Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018
Atu5177
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 171.240 kb on - strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.291 kb on + strand, within Atu8203 at 171.321 kb on + strand at 171.371 kb on - strand at 171.376 kb on - strand at 171.385 kb on + strand at 171.417 kb on - strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.608 kb on + strand at 171.609 kb on - strand at 171.623 kb on + strand, within Atu5175 at 171.628 kb on + strand, within Atu5175 at 171.726 kb on + strand, within Atu5175 at 171.734 kb on - strand, within Atu5175 at 171.745 kb on + strand, within Atu5175 at 171.753 kb on - strand, within Atu5175 at 171.833 kb on - strand, within Atu5175 at 171.838 kb on + strand, within Atu5175 at 171.841 kb on - strand, within Atu5175 at 171.895 kb on + strand, within Atu5175 at 171.903 kb on - strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.979 kb on - strand, within Atu5175 at 172.015 kb on + strand, within Atu5175 at 172.017 kb on + strand, within Atu5175 at 172.057 kb on + strand, within Atu5175 at 172.067 kb on + strand, within Atu5175 at 172.084 kb on + strand, within Atu5175 at 172.091 kb on - strand, within Atu5175 at 172.231 kb on + strand at 172.277 kb on + strand at 172.282 kb on + strand at 172.285 kb on - strand at 172.306 kb on - strand at 172.308 kb on + strand at 172.403 kb on - strand, within Atu5176 at 172.419 kb on + strand, within Atu5176 at 172.509 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.603 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.766 kb on + strand, within Atu5176 at 172.835 kb on + strand, within Atu5176 at 172.862 kb on + strand, within Atu5176 at 172.994 kb on - strand, within Atu5176 at 172.999 kb on + strand, within Atu5176 at 172.999 kb on - strand, within Atu5176 at 173.025 kb on + strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.042 kb on - strand, within Atu5176 at 173.092 kb on - strand, within Atu5176 at 173.143 kb on - strand, within Atu5176 at 173.294 kb on + strand, within Atu5176 at 173.306 kb on + strand, within Atu5176 at 173.330 kb on - strand, within Atu5176 at 173.411 kb on - strand, within Atu5176 at 173.419 kb on - strand, within Atu5176 at 173.436 kb on + strand, within Atu5176 at 173.442 kb on - strand, within Atu5176 at 173.444 kb on - strand at 173.458 kb on + strand at 173.458 kb on + strand at 173.463 kb on - strand at 173.508 kb on + strand at 173.547 kb on + strand at 173.574 kb on + strand at 173.872 kb on + strand at 174.115 kb on + strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.148 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.162 kb on - strand, within Atu5177 at 174.190 kb on + strand, within Atu5177 at 174.205 kb on - strand, within Atu5177 at 174.248 kb on - strand, within Atu5177 at 174.249 kb on + strand, within Atu5177 at 174.278 kb on + strand, within Atu5177 at 174.288 kb on - strand, within Atu5177 at 174.309 kb on - strand, within Atu5177 at 174.331 kb on + strand, within Atu5177 at 174.348 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.374 kb on + strand, within Atu5177 at 174.445 kb on + strand, within Atu5177 at 174.451 kb on - strand, within Atu5177 at 174.489 kb on + strand, within Atu5177 at 174.497 kb on - strand, within Atu5177
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 171,240 - Atu8203 0.63 +0.7 171,240 - Atu8203 0.63 +0.1 171,291 + Atu8203 0.81 -0.1 171,321 + +0.5 171,371 - +0.7 171,376 - -0.1 171,385 + +0.1 171,417 - -0.2 171,602 + -0.2 171,602 + -0.6 171,608 + -0.1 171,609 - +0.1 171,623 + Atu5175 0.10 +0.4 171,628 + Atu5175 0.11 +0.9 171,726 + Atu5175 0.26 +0.6 171,734 - Atu5175 0.27 +0.2 171,745 + Atu5175 0.28 -0.7 171,753 - Atu5175 0.30 -0.3 171,833 - Atu5175 0.41 +0.9 171,838 + Atu5175 0.42 -0.1 171,841 - Atu5175 0.43 +0.1 171,895 + Atu5175 0.51 -0.0 171,903 - Atu5175 0.52 -0.1 171,914 + Atu5175 0.53 +0.2 171,914 + Atu5175 0.53 +0.1 171,979 - Atu5175 0.63 +0.4 172,015 + Atu5175 0.68 +0.1 172,017 + Atu5175 0.69 -0.6 172,057 + Atu5175 0.75 +0.8 172,067 + Atu5175 0.76 -0.9 172,084 + Atu5175 0.79 +0.5 172,091 - Atu5175 0.80 -0.1 172,231 + +0.7 172,277 + +0.2 172,282 + +0.5 172,285 - +0.0 172,306 - -1.1 172,308 + -0.4 172,403 - Atu5176 0.13 -0.1 172,419 + Atu5176 0.14 +0.2 172,509 - Atu5176 0.21 +1.0 172,569 - Atu5176 0.25 +0.7 172,569 - Atu5176 0.25 -0.1 172,569 - Atu5176 0.25 -0.2 172,603 - Atu5176 0.28 -0.4 172,694 - Atu5176 0.34 +0.8 172,694 - Atu5176 0.34 -0.3 172,766 + Atu5176 0.40 +0.1 172,835 + Atu5176 0.45 +0.5 172,862 + Atu5176 0.47 +0.1 172,994 - Atu5176 0.57 -0.1 172,999 + Atu5176 0.57 +0.1 172,999 - Atu5176 0.57 -0.9 173,025 + Atu5176 0.59 -0.1 173,033 - Atu5176 0.60 +0.5 173,033 - Atu5176 0.60 -1.1 173,033 - Atu5176 0.60 +1.2 173,042 - Atu5176 0.60 +1.4 173,092 - Atu5176 0.64 -0.4 173,143 - Atu5176 0.68 -0.1 173,294 + Atu5176 0.79 -0.1 173,306 + Atu5176 0.80 -1.1 173,330 - Atu5176 0.82 -0.3 173,411 - Atu5176 0.88 -0.3 173,419 - Atu5176 0.88 +0.1 173,436 + Atu5176 0.89 +0.7 173,442 - Atu5176 0.90 -0.4 173,444 - +0.3 173,458 + +0.4 173,458 + +0.4 173,463 - -0.6 173,508 + -0.5 173,547 + +0.3 173,574 + +2.9 173,872 + +0.9 174,115 + Atu5177 0.24 +0.2 174,123 - Atu5177 0.25 +0.9 174,123 - Atu5177 0.25 +0.7 174,148 + Atu5177 0.27 -0.4 174,154 + Atu5177 0.28 -0.4 174,154 + Atu5177 0.28 -0.1 174,162 - Atu5177 0.28 -0.4 174,190 + Atu5177 0.31 -0.4 174,205 - Atu5177 0.32 +0.6 174,248 - Atu5177 0.35 +0.1 174,249 + Atu5177 0.36 -0.1 174,278 + Atu5177 0.38 +0.8 174,288 - Atu5177 0.39 -0.6 174,309 - Atu5177 0.41 -0.6 174,331 + Atu5177 0.42 +0.9 174,348 + Atu5177 0.44 +0.2 174,362 + Atu5177 0.45 -0.4 174,362 + Atu5177 0.45 -0.1 174,374 + Atu5177 0.46 -0.4 174,445 + Atu5177 0.52 -1.8 174,451 - Atu5177 0.52 +0.1 174,489 + Atu5177 0.56 +0.7 174,497 - Atu5177 0.56 -1.1
Or see this region's nucleotide sequence