Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0384 and Atu0385 overlap by 1 nucleotides Atu0385 and Atu8066 are separated by 36 nucleotides Atu8066 and Atu0386 are separated by 41 nucleotides Atu0386 and Atu0387 are separated by 37 nucleotides
Atu0384: Atu0384 - preprotein translocase 60 kD membrane subunit, at 376,063 to 377,862
Atu0384
Atu0385: Atu0385 - ribonuclease P protein component, at 377,862 to 378,245
Atu0385
Atu8066: Atu8066 - 50S ribosomal protein L34, at 378,282 to 378,419
Atu8066
Atu0386: Atu0386 - hypothetical protein, at 378,461 to 378,733
Atu0386
Atu0387: Atu0387 - methyl-accepting chemotaxis protein, at 378,771 to 380,819
Atu0387
Position (kb) 378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 378.702 kb on - strand, within Atu0386 at 378.814 kb on + strand at 378.824 kb on + strand at 378.832 kb on + strand at 378.840 kb on + strand at 378.842 kb on + strand at 378.913 kb on - strand at 378.921 kb on + strand at 378.957 kb on - strand at 378.966 kb on + strand at 379.033 kb on - strand, within Atu0387 at 379.054 kb on + strand, within Atu0387 at 379.077 kb on + strand, within Atu0387 at 379.111 kb on + strand, within Atu0387 at 379.119 kb on - strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.195 kb on + strand, within Atu0387 at 379.213 kb on - strand, within Atu0387 at 379.217 kb on + strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.280 kb on + strand, within Atu0387 at 379.289 kb on - strand, within Atu0387 at 379.345 kb on + strand, within Atu0387 at 379.379 kb on + strand, within Atu0387 at 379.399 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.479 kb on - strand, within Atu0387 at 379.549 kb on + strand, within Atu0387 at 379.562 kb on + strand, within Atu0387 at 379.570 kb on - strand, within Atu0387 at 379.593 kb on + strand, within Atu0387 at 379.669 kb on - strand, within Atu0387 at 379.681 kb on - strand, within Atu0387 at 379.705 kb on + strand, within Atu0387 at 379.732 kb on - strand, within Atu0387
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 378,702 - Atu0386 0.88 +0.3 378,814 + +0.5 378,824 + +0.3 378,832 + -0.6 378,840 + +0.1 378,842 + -1.7 378,913 - +0.2 378,921 + +0.0 378,957 - -1.3 378,966 + +0.2 379,033 - Atu0387 0.13 -0.0 379,054 + Atu0387 0.14 +0.2 379,077 + Atu0387 0.15 +0.1 379,111 + Atu0387 0.17 -0.0 379,119 - Atu0387 0.17 -0.2 379,121 + Atu0387 0.17 +0.4 379,121 + Atu0387 0.17 +0.1 379,121 + Atu0387 0.17 -0.4 379,121 + Atu0387 0.17 +0.1 379,121 + Atu0387 0.17 +0.1 379,121 + Atu0387 0.17 -0.7 379,121 + Atu0387 0.17 +0.6 379,129 - Atu0387 0.17 -0.8 379,129 - Atu0387 0.17 -0.2 379,136 + Atu0387 0.18 +0.7 379,136 + Atu0387 0.18 +0.5 379,190 + Atu0387 0.20 -0.1 379,190 + Atu0387 0.20 -0.1 379,195 + Atu0387 0.21 -0.3 379,213 - Atu0387 0.22 +0.1 379,217 + Atu0387 0.22 -0.3 379,225 - Atu0387 0.22 -0.8 379,225 - Atu0387 0.22 +0.1 379,280 + Atu0387 0.25 +0.7 379,289 - Atu0387 0.25 -0.4 379,345 + Atu0387 0.28 -0.5 379,379 + Atu0387 0.30 -0.2 379,399 - Atu0387 0.31 -0.9 379,469 - Atu0387 0.34 -0.0 379,469 - Atu0387 0.34 +0.2 379,479 - Atu0387 0.35 +0.7 379,549 + Atu0387 0.38 +0.5 379,562 + Atu0387 0.39 -0.7 379,570 - Atu0387 0.39 -0.3 379,593 + Atu0387 0.40 -1.9 379,669 - Atu0387 0.44 +0.7 379,681 - Atu0387 0.44 -0.6 379,705 + Atu0387 0.46 +0.4 379,732 - Atu0387 0.47 -0.5
Or see this region's nucleotide sequence