Strain Fitness in Escherichia coli BW25113 around b2917
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,057,927 | + | argP | b2916 | 0.17 | -1.0 |
3,057,989 | + | argP | b2916 | 0.24 | -0.2 |
3,057,989 | + | argP | b2916 | 0.24 | -0.0 |
3,058,012 | - | argP | b2916 | 0.27 | -1.9 |
3,058,012 | - | argP | b2916 | 0.27 | -0.3 |
3,058,242 | + | argP | b2916 | 0.52 | +0.0 |
3,058,275 | - | argP | b2916 | 0.56 | -1.5 |
3,058,275 | - | argP | b2916 | 0.56 | +0.1 |
3,058,275 | - | argP | b2916 | 0.56 | -0.2 |
3,058,352 | + | argP | b2916 | 0.65 | -0.3 |
3,058,352 | + | argP | b2916 | 0.65 | -0.5 |
3,058,408 | + | argP | b2916 | 0.71 | +0.0 |
3,058,459 | + | argP | b2916 | 0.77 | -0.2 |
3,058,459 | + | argP | b2916 | 0.77 | +0.7 |
3,058,462 | + | argP | b2916 | 0.77 | +0.6 |
3,058,462 | + | argP | b2916 | 0.77 | +0.7 |
3,058,487 | + | argP | b2916 | 0.80 | -0.0 |
3,058,524 | - | argP | b2916 | 0.84 | +0.4 |
3,058,726 | + | +0.6 | |||
3,058,831 | + | +0.3 | |||
3,059,023 | + | -0.7 | |||
3,059,023 | + | -0.3 | |||
3,059,050 | + | -0.2 | |||
3,059,077 | - | +0.1 | |||
3,059,077 | - | +1.0 | |||
3,059,273 | - | yliK | b2917 | 0.19 | +0.9 |
3,059,349 | + | yliK | b2917 | 0.22 | -0.6 |
3,059,354 | + | yliK | b2917 | 0.22 | +0.9 |
3,059,354 | + | yliK | b2917 | 0.22 | +0.7 |
3,059,357 | - | yliK | b2917 | 0.23 | +1.1 |
3,059,388 | - | yliK | b2917 | 0.24 | +0.8 |
3,059,388 | - | yliK | b2917 | 0.24 | -0.3 |
3,059,395 | + | yliK | b2917 | 0.24 | +0.5 |
3,059,447 | - | yliK | b2917 | 0.27 | -0.7 |
3,059,548 | - | yliK | b2917 | 0.32 | -0.2 |
3,059,571 | - | yliK | b2917 | 0.33 | +0.1 |
3,059,571 | - | yliK | b2917 | 0.33 | +0.6 |
3,059,591 | - | yliK | b2917 | 0.34 | -0.1 |
3,059,593 | - | yliK | b2917 | 0.34 | +0.7 |
3,059,593 | - | yliK | b2917 | 0.34 | +0.2 |
3,059,608 | + | yliK | b2917 | 0.34 | -0.7 |
3,059,630 | - | yliK | b2917 | 0.35 | +0.3 |
3,059,631 | + | yliK | b2917 | 0.35 | +0.1 |
3,059,634 | - | yliK | b2917 | 0.36 | -0.4 |
3,059,634 | - | yliK | b2917 | 0.36 | +0.1 |
3,059,639 | - | yliK | b2917 | 0.36 | +0.5 |
3,059,707 | + | yliK | b2917 | 0.39 | -0.1 |
3,059,867 | - | yliK | b2917 | 0.46 | -0.1 |
3,059,867 | - | yliK | b2917 | 0.46 | +0.2 |
3,059,897 | + | yliK | b2917 | 0.48 | +0.6 |
3,059,897 | + | yliK | b2917 | 0.48 | -0.1 |
3,059,919 | - | yliK | b2917 | 0.49 | -0.6 |
3,059,979 | - | yliK | b2917 | 0.52 | +0.4 |
3,060,026 | + | yliK | b2917 | 0.54 | -0.1 |
3,060,064 | - | yliK | b2917 | 0.56 | +0.7 |
3,060,068 | + | yliK | b2917 | 0.56 | +0.2 |
3,060,151 | + | yliK | b2917 | 0.60 | -0.4 |
3,060,215 | + | yliK | b2917 | 0.63 | +0.2 |
3,060,350 | - | yliK | b2917 | 0.69 | -0.7 |
3,060,369 | + | yliK | b2917 | 0.70 | -0.6 |
3,060,445 | + | yliK | b2917 | 0.73 | +0.0 |
3,060,458 | - | yliK | b2917 | 0.74 | +0.3 |
3,060,479 | - | yliK | b2917 | 0.75 | -0.2 |
3,060,515 | - | yliK | b2917 | 0.77 | -0.3 |
3,060,592 | - | yliK | b2917 | 0.80 | -0.1 |
3,060,592 | - | yliK | b2917 | 0.80 | -0.5 |
3,060,662 | - | yliK | b2917 | 0.83 | -0.4 |
3,060,741 | + | yliK | b2917 | 0.87 | +0.0 |
3,060,741 | + | yliK | b2917 | 0.87 | +0.1 |
3,060,826 | + | +0.2 | |||
3,060,826 | + | -0.3 | |||
3,060,926 | + | +0.3 | |||
3,060,958 | + | -1.7 | |||
3,060,958 | + | -1.0 | |||
3,060,963 | + | -0.5 | |||
3,061,019 | + | +1.0 | |||
3,061,019 | + | -1.1 | |||
3,061,082 | - | +0.1 | |||
3,061,088 | - | +0.8 | |||
3,061,127 | + | argK | b2918 | 0.12 | -0.4 |
3,061,127 | + | argK | b2918 | 0.12 | -0.1 |
3,061,292 | - | argK | b2918 | 0.28 | -0.5 |
3,061,292 | - | argK | b2918 | 0.28 | +0.2 |
3,061,372 | + | argK | b2918 | 0.36 | -0.7 |
3,061,387 | + | argK | b2918 | 0.38 | -0.4 |
3,061,397 | + | argK | b2918 | 0.39 | +0.6 |
3,061,561 | - | argK | b2918 | 0.55 | -0.7 |
3,061,654 | + | argK | b2918 | 0.65 | +0.1 |
3,061,654 | + | argK | b2918 | 0.65 | -0.9 |
Or see this region's nucleotide sequence