Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0876 and Atu0877 are separated by 112 nucleotides Atu0877 and Atu0878 overlap by 9 nucleotides Atu0878 and Atu0879 are separated by 134 nucleotides
Atu0876: Atu0876 - superoxide dismutase, at 872,849 to 873,451
Atu0876
Atu0877: Atu0877 - hypothetical protein, at 873,564 to 874,415
Atu0877
Atu0878: Atu0878 - hypothetical protein, at 874,407 to 875,138
Atu0878
Atu0879: Atu0879 - RhtB family transporter, at 875,273 to 875,917
Atu0879
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 873.504 kb on - strand at 873.568 kb on - strand at 873.650 kb on - strand, within Atu0877 at 873.704 kb on - strand, within Atu0877 at 873.789 kb on - strand, within Atu0877 at 874.013 kb on + strand, within Atu0877 at 874.021 kb on - strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.090 kb on + strand, within Atu0877 at 874.180 kb on - strand, within Atu0877 at 874.192 kb on + strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.330 kb on - strand at 874.434 kb on - strand at 874.437 kb on + strand at 874.445 kb on - strand at 874.615 kb on + strand, within Atu0878 at 874.672 kb on + strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.690 kb on - strand, within Atu0878 at 874.736 kb on - strand, within Atu0878 at 874.761 kb on - strand, within Atu0878 at 874.797 kb on - strand, within Atu0878 at 874.879 kb on + strand, within Atu0878 at 874.940 kb on + strand, within Atu0878 at 874.948 kb on - strand, within Atu0878 at 874.996 kb on + strand, within Atu0878 at 875.004 kb on - strand, within Atu0878 at 875.010 kb on - strand, within Atu0878 at 875.110 kb on + strand at 875.118 kb on - strand at 875.162 kb on - strand at 875.264 kb on + strand at 875.336 kb on + strand at 875.342 kb on + strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.359 kb on + strand, within Atu0879 at 875.533 kb on - strand, within Atu0879 at 875.543 kb on - strand, within Atu0879 at 875.629 kb on - strand, within Atu0879 at 875.681 kb on - strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.730 kb on + strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.738 kb on - strand, within Atu0879 at 875.934 kb on + strand at 875.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 873,504 - -0.6 873,568 - -0.9 873,650 - Atu0877 0.10 -0.2 873,704 - Atu0877 0.16 -0.1 873,789 - Atu0877 0.26 +0.3 874,013 + Atu0877 0.53 -0.5 874,021 - Atu0877 0.54 +0.6 874,043 + Atu0877 0.56 +0.2 874,043 + Atu0877 0.56 +0.1 874,090 + Atu0877 0.62 -0.3 874,180 - Atu0877 0.72 -0.1 874,192 + Atu0877 0.74 +0.2 874,200 - Atu0877 0.75 +0.7 874,200 - Atu0877 0.75 +0.4 874,200 - Atu0877 0.75 +1.5 874,200 - Atu0877 0.75 +3.5 874,330 - +0.7 874,434 - +0.8 874,437 + +0.8 874,445 - +0.2 874,615 + Atu0878 0.28 -1.1 874,672 + Atu0878 0.36 -0.1 874,680 - Atu0878 0.37 -1.2 874,680 - Atu0878 0.37 -1.9 874,680 - Atu0878 0.37 -0.8 874,690 - Atu0878 0.39 -0.2 874,736 - Atu0878 0.45 +0.2 874,761 - Atu0878 0.48 +0.6 874,797 - Atu0878 0.53 -1.0 874,879 + Atu0878 0.64 -0.9 874,940 + Atu0878 0.73 -1.1 874,948 - Atu0878 0.74 +0.9 874,996 + Atu0878 0.80 -0.3 875,004 - Atu0878 0.82 -1.0 875,010 - Atu0878 0.82 +1.5 875,110 + -0.3 875,118 - +0.2 875,162 - +0.2 875,264 + +0.2 875,336 + +0.3 875,342 + Atu0879 0.11 -0.4 875,350 - Atu0879 0.12 -0.0 875,350 - Atu0879 0.12 +0.2 875,359 + Atu0879 0.13 +0.5 875,533 - Atu0879 0.40 +0.4 875,543 - Atu0879 0.42 +0.2 875,629 - Atu0879 0.55 +0.6 875,681 - Atu0879 0.63 +0.2 875,730 + Atu0879 0.71 -0.8 875,730 + Atu0879 0.71 -1.1 875,738 - Atu0879 0.72 +0.5 875,738 - Atu0879 0.72 +0.1 875,934 + +0.8 875,993 + +0.8
Or see this region's nucleotide sequence