Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3446 and Atu3447 overlap by 10 nucleotides Atu3447 and Atu3448 are separated by 7 nucleotides
Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836
Atu3446
Atu3447: Atu3447 - hypothetical protein, at 495,827 to 496,720
Atu3447
Atu3448: Atu3448 - dibenzothiophene desulfurization protein B, at 496,728 to 497,780
Atu3448
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1 at 494.856 kb on + strand, within Atu3446 at 494.893 kb on - strand, within Atu3446 at 495.018 kb on - strand, within Atu3446 at 495.062 kb on - strand, within Atu3446 at 495.259 kb on - strand, within Atu3446 at 495.264 kb on - strand, within Atu3446 at 495.609 kb on + strand, within Atu3446 at 495.643 kb on + strand, within Atu3446 at 495.674 kb on - strand, within Atu3446 at 495.757 kb on - strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.808 kb on - strand at 495.964 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.137 kb on - strand, within Atu3447 at 496.244 kb on - strand, within Atu3447 at 496.474 kb on - strand, within Atu3447 at 496.491 kb on - strand, within Atu3447 at 496.538 kb on + strand, within Atu3447 at 496.724 kb on - strand at 496.748 kb on - strand at 496.753 kb on + strand at 496.771 kb on + strand at 496.774 kb on - strand at 496.779 kb on - strand at 496.966 kb on + strand, within Atu3448 at 497.000 kb on - strand, within Atu3448 at 497.000 kb on - strand, within Atu3448 at 497.198 kb on - strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.631 kb on - strand, within Atu3448 at 497.636 kb on - strand, within Atu3448 at 497.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 494,856 + Atu3446 0.16 +0.3 494,893 - Atu3446 0.19 +0.1 495,018 - Atu3446 0.30 -0.4 495,062 - Atu3446 0.34 -0.2 495,259 - Atu3446 0.51 +0.3 495,264 - Atu3446 0.51 -0.5 495,609 + Atu3446 0.81 -0.1 495,643 + Atu3446 0.83 +0.5 495,674 - Atu3446 0.86 +0.3 495,757 - -1.2 495,800 + -0.3 495,800 + -0.3 495,800 + +0.6 495,808 - +0.2 495,964 - Atu3447 0.15 +1.4 496,044 - Atu3447 0.24 -0.9 496,044 - Atu3447 0.24 -0.0 496,137 - Atu3447 0.35 +0.0 496,244 - Atu3447 0.47 +0.6 496,474 - Atu3447 0.72 -0.1 496,491 - Atu3447 0.74 +1.6 496,538 + Atu3447 0.80 +0.6 496,724 - -1.6 496,748 - -0.2 496,753 + +0.0 496,771 + +0.6 496,774 - -0.3 496,779 - +0.1 496,966 + Atu3448 0.23 -0.9 497,000 - Atu3448 0.26 +0.4 497,000 - Atu3448 0.26 +0.2 497,198 - Atu3448 0.45 -0.7 497,494 + Atu3448 0.73 -0.5 497,494 + Atu3448 0.73 -0.2 497,631 - Atu3448 0.86 -0.3 497,636 - Atu3448 0.86 +0.4 497,719 + +0.3
Or see this region's nucleotide sequence