Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3333 and Atu3334 overlap by 4 nucleotides Atu3334 and Atu3335 are separated by 246 nucleotides Atu3335 and Atu8031 are separated by 41 nucleotides
Atu3333: Atu3333 - 3-ketoacyl-ACP reductase, at 368,557 to 369,342
Atu3333
Atu3334: Atu3334 - hypothetical protein, at 369,339 to 369,572
Atu3334
Atu3335: Atu3335 - 3-methyladenine DNA glycosylase, at 369,819 to 370,400
Atu3335
Atu8031: Atu8031 - hypothetical protein, at 370,442 to 370,600
Atu8031
Position (kb)
369
370 Strain fitness (log2 ratio)
-1
0
1
2 at 368.435 kb on - strand at 368.488 kb on - strand at 368.491 kb on + strand at 368.517 kb on + strand at 368.530 kb on + strand at 368.817 kb on + strand, within Atu3333 at 368.858 kb on - strand, within Atu3333 at 368.880 kb on + strand, within Atu3333 at 368.889 kb on + strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.922 kb on + strand, within Atu3333 at 368.961 kb on + strand, within Atu3333 at 368.976 kb on - strand, within Atu3333 at 369.021 kb on + strand, within Atu3333 at 369.078 kb on + strand, within Atu3333 at 369.138 kb on - strand, within Atu3333 at 369.267 kb on + strand at 369.267 kb on + strand at 369.307 kb on + strand at 369.362 kb on + strand at 369.382 kb on - strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.466 kb on + strand, within Atu3334 at 369.480 kb on + strand, within Atu3334 at 369.636 kb on + strand at 369.644 kb on - strand at 369.820 kb on - strand at 369.853 kb on - strand at 369.876 kb on + strand at 369.950 kb on + strand, within Atu3335 at 370.011 kb on + strand, within Atu3335 at 370.014 kb on - strand, within Atu3335 at 370.031 kb on + strand, within Atu3335 at 370.066 kb on - strand, within Atu3335 at 370.204 kb on - strand, within Atu3335 at 370.226 kb on + strand, within Atu3335 at 370.229 kb on + strand, within Atu3335 at 370.236 kb on + strand, within Atu3335 at 370.279 kb on - strand, within Atu3335 at 370.297 kb on - strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.336 kb on - strand, within Atu3335 at 370.384 kb on + strand at 370.392 kb on - strand at 370.402 kb on - strand at 370.426 kb on - strand at 370.512 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 368,435 - -0.3 368,488 - -0.4 368,491 + +0.3 368,517 + -0.8 368,530 + +0.2 368,817 + Atu3333 0.33 -0.5 368,858 - Atu3333 0.38 -0.3 368,880 + Atu3333 0.41 +0.2 368,889 + Atu3333 0.42 -0.1 368,897 - Atu3333 0.43 +1.5 368,897 - Atu3333 0.43 +0.7 368,897 - Atu3333 0.43 +0.3 368,922 + Atu3333 0.46 -0.1 368,961 + Atu3333 0.51 +0.0 368,976 - Atu3333 0.53 -0.3 369,021 + Atu3333 0.59 +0.3 369,078 + Atu3333 0.66 +0.3 369,138 - Atu3333 0.74 +0.2 369,267 + -0.2 369,267 + +0.4 369,307 + -0.8 369,362 + +0.5 369,382 - Atu3334 0.18 +0.7 369,445 + Atu3334 0.45 -0.7 369,445 + Atu3334 0.45 +2.3 369,445 + Atu3334 0.45 -0.2 369,453 - Atu3334 0.49 +0.6 369,453 - Atu3334 0.49 +0.7 369,466 + Atu3334 0.54 +1.1 369,480 + Atu3334 0.60 -0.4 369,636 + -1.0 369,644 - +0.7 369,820 - +0.0 369,853 - +0.2 369,876 + -0.3 369,950 + Atu3335 0.23 -0.7 370,011 + Atu3335 0.33 -0.1 370,014 - Atu3335 0.34 -0.6 370,031 + Atu3335 0.36 -0.3 370,066 - Atu3335 0.42 -0.7 370,204 - Atu3335 0.66 +0.2 370,226 + Atu3335 0.70 +1.1 370,229 + Atu3335 0.70 +1.1 370,236 + Atu3335 0.72 +0.3 370,279 - Atu3335 0.79 -0.3 370,297 - Atu3335 0.82 +1.3 370,328 + Atu3335 0.87 -0.3 370,328 + Atu3335 0.87 -0.1 370,336 - Atu3335 0.89 +0.4 370,384 + +0.3 370,392 - +1.4 370,402 - -0.1 370,426 - +0.3 370,512 + Atu8031 0.44 +0.0 370,572 + Atu8031 0.82 -0.3 370,572 + Atu8031 0.82 +0.3 370,572 + Atu8031 0.82 -0.2
Or see this region's nucleotide sequence