Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1069 and Atu1070 are separated by 3 nucleotides Atu1070 and Atu1071 overlap by 1 nucleotides Atu1071 and Atu1072 overlap by 4 nucleotides Atu1072 and Atu1073 are separated by 258 nucleotides
Atu1069: Atu1069 - proline iminopeptidase, at 1,061,975 to 1,062,931
Atu1069
Atu1070: Atu1070 - hypothetical protein, at 1,062,935 to 1,063,393
Atu1070
Atu1071: Atu1071 - hypothetical protein, at 1,063,393 to 1,063,866
Atu1071
Atu1072: Atu1072 - hypothetical protein, at 1,063,863 to 1,064,231
Atu1072
Atu1073: Atu1073 - cysteinyl-tRNA synthetase, at 1,064,490 to 1,065,875
Atu1073
Position (kb)
1063
1064
1065 Strain fitness (log2 ratio)
-2
-1
0
1 at 1062.912 kb on - strand at 1062.927 kb on - strand at 1062.990 kb on - strand, within Atu1070 at 1063.013 kb on + strand, within Atu1070 at 1063.032 kb on + strand, within Atu1070 at 1063.034 kb on - strand, within Atu1070 at 1063.096 kb on + strand, within Atu1070 at 1063.104 kb on - strand, within Atu1070 at 1063.144 kb on + strand, within Atu1070 at 1063.154 kb on + strand, within Atu1070 at 1063.211 kb on - strand, within Atu1070 at 1063.213 kb on + strand, within Atu1070 at 1063.469 kb on + strand, within Atu1071 at 1063.473 kb on + strand, within Atu1071 at 1063.507 kb on + strand, within Atu1071 at 1063.515 kb on - strand, within Atu1071 at 1063.627 kb on + strand, within Atu1071 at 1063.635 kb on - strand, within Atu1071 at 1063.783 kb on + strand, within Atu1071 at 1063.798 kb on + strand, within Atu1071 at 1063.798 kb on + strand, within Atu1071 at 1063.852 kb on + strand at 1063.909 kb on + strand, within Atu1072 at 1063.954 kb on + strand, within Atu1072 at 1063.954 kb on + strand, within Atu1072 at 1063.962 kb on + strand, within Atu1072 at 1064.026 kb on + strand, within Atu1072 at 1064.166 kb on + strand, within Atu1072 at 1064.209 kb on + strand at 1064.210 kb on - strand at 1064.210 kb on - strand at 1064.223 kb on - strand at 1064.226 kb on + strand at 1064.234 kb on - strand at 1064.324 kb on - strand at 1064.324 kb on - strand at 1064.369 kb on + strand at 1064.402 kb on + strand at 1064.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,062,912 - +0.0 1,062,927 - -0.0 1,062,990 - Atu1070 0.12 -0.7 1,063,013 + Atu1070 0.17 +1.5 1,063,032 + Atu1070 0.21 +0.1 1,063,034 - Atu1070 0.22 +0.2 1,063,096 + Atu1070 0.35 -0.2 1,063,104 - Atu1070 0.37 +1.0 1,063,144 + Atu1070 0.46 -1.0 1,063,154 + Atu1070 0.48 -0.3 1,063,211 - Atu1070 0.60 -0.4 1,063,213 + Atu1070 0.61 -0.7 1,063,469 + Atu1071 0.16 +0.1 1,063,473 + Atu1071 0.17 -2.0 1,063,507 + Atu1071 0.24 +0.0 1,063,515 - Atu1071 0.26 -0.4 1,063,627 + Atu1071 0.49 +0.6 1,063,635 - Atu1071 0.51 -0.6 1,063,783 + Atu1071 0.82 +0.4 1,063,798 + Atu1071 0.85 +0.4 1,063,798 + Atu1071 0.85 +0.3 1,063,852 + -0.1 1,063,909 + Atu1072 0.12 -0.1 1,063,954 + Atu1072 0.25 -0.2 1,063,954 + Atu1072 0.25 +0.2 1,063,962 + Atu1072 0.27 -0.1 1,064,026 + Atu1072 0.44 +1.7 1,064,166 + Atu1072 0.82 +1.3 1,064,209 + -0.1 1,064,210 - +0.1 1,064,210 - -0.0 1,064,223 - -0.6 1,064,226 + +0.9 1,064,234 - +0.0 1,064,324 - +0.1 1,064,324 - +0.2 1,064,369 + +0.6 1,064,402 + +1.2 1,064,463 + +0.3
Or see this region's nucleotide sequence