Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1041 and Atu1042 are separated by 209 nucleotides Atu1042 and Atu1043 are separated by 11 nucleotides Atu1043 and Atu1044 overlap by 4 nucleotides
Atu1041: Atu1041 - methyltransferase, at 1,032,848 to 1,033,582
Atu1041
Atu1042: Atu1042 - hypothetical protein, at 1,033,792 to 1,034,634
Atu1042
Atu1043: Atu1043 - hypothetical protein, at 1,034,646 to 1,035,290
Atu1043
Atu1044: Atu1044 - hypothetical protein, at 1,035,287 to 1,037,935
Atu1044
Position (kb)
1033
1034
1035 Strain fitness (log2 ratio)
-2
-1
0
1 at 1032.887 kb on + strand at 1032.947 kb on - strand, within Atu1041 at 1033.031 kb on - strand, within Atu1041 at 1033.040 kb on - strand, within Atu1041 at 1033.203 kb on - strand, within Atu1041 at 1033.239 kb on - strand, within Atu1041 at 1033.249 kb on - strand, within Atu1041 at 1033.337 kb on + strand, within Atu1041 at 1033.345 kb on - strand, within Atu1041 at 1033.427 kb on + strand, within Atu1041 at 1033.427 kb on + strand, within Atu1041 at 1033.771 kb on + strand at 1033.994 kb on - strand, within Atu1042 at 1034.017 kb on + strand, within Atu1042 at 1034.118 kb on + strand, within Atu1042 at 1034.226 kb on - strand, within Atu1042 at 1034.226 kb on - strand, within Atu1042 at 1034.226 kb on - strand, within Atu1042 at 1034.226 kb on - strand, within Atu1042 at 1034.319 kb on - strand, within Atu1042 at 1034.389 kb on - strand, within Atu1042 at 1034.399 kb on - strand, within Atu1042 at 1034.597 kb on + strand at 1034.607 kb on - strand at 1034.652 kb on - strand at 1034.685 kb on - strand at 1034.743 kb on + strand, within Atu1043 at 1034.969 kb on - strand, within Atu1043 at 1035.020 kb on - strand, within Atu1043 at 1035.124 kb on - strand, within Atu1043 at 1035.177 kb on - strand, within Atu1043 at 1035.196 kb on - strand, within Atu1043 at 1035.244 kb on - strand at 1035.343 kb on + strand at 1035.392 kb on - strand at 1035.392 kb on - strand at 1035.538 kb on - strand at 1035.555 kb on - strand, within Atu1044 at 1035.555 kb on - strand, within Atu1044 at 1035.556 kb on - strand, within Atu1044 at 1035.580 kb on - strand, within Atu1044 at 1035.583 kb on + strand, within Atu1044 at 1035.613 kb on + strand, within Atu1044
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,032,887 + -0.1 1,032,947 - Atu1041 0.13 -0.6 1,033,031 - Atu1041 0.25 +1.2 1,033,040 - Atu1041 0.26 -0.0 1,033,203 - Atu1041 0.48 -0.1 1,033,239 - Atu1041 0.53 +0.0 1,033,249 - Atu1041 0.55 -0.2 1,033,337 + Atu1041 0.67 -0.1 1,033,345 - Atu1041 0.68 +0.6 1,033,427 + Atu1041 0.79 -0.6 1,033,427 + Atu1041 0.79 -0.3 1,033,771 + -0.5 1,033,994 - Atu1042 0.24 +0.9 1,034,017 + Atu1042 0.27 +0.1 1,034,118 + Atu1042 0.39 +0.7 1,034,226 - Atu1042 0.51 +0.2 1,034,226 - Atu1042 0.51 -0.6 1,034,226 - Atu1042 0.51 +0.1 1,034,226 - Atu1042 0.51 +0.5 1,034,319 - Atu1042 0.63 +1.0 1,034,389 - Atu1042 0.71 -1.1 1,034,399 - Atu1042 0.72 +0.1 1,034,597 + -2.4 1,034,607 - +0.4 1,034,652 - +0.7 1,034,685 - -0.0 1,034,743 + Atu1043 0.15 -0.8 1,034,969 - Atu1043 0.50 -0.1 1,035,020 - Atu1043 0.58 +0.2 1,035,124 - Atu1043 0.74 -0.1 1,035,177 - Atu1043 0.82 -0.1 1,035,196 - Atu1043 0.85 +0.4 1,035,244 - -0.5 1,035,343 + -0.3 1,035,392 - +0.1 1,035,392 - -1.5 1,035,538 - -0.7 1,035,555 - Atu1044 0.10 +0.3 1,035,555 - Atu1044 0.10 +0.3 1,035,556 - Atu1044 0.10 +0.1 1,035,580 - Atu1044 0.11 +0.1 1,035,583 + Atu1044 0.11 -0.5 1,035,613 + Atu1044 0.12 -0.5
Or see this region's nucleotide sequence