Strain Fitness in Agrobacterium fabrum C58 around Atu1042

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1041 and Atu1042 are separated by 209 nucleotidesAtu1042 and Atu1043 are separated by 11 nucleotidesAtu1043 and Atu1044 overlap by 4 nucleotides Atu1041: Atu1041 - methyltransferase, at 1,032,848 to 1,033,582 Atu1041 Atu1042: Atu1042 - hypothetical protein, at 1,033,792 to 1,034,634 Atu1042 Atu1043: Atu1043 - hypothetical protein, at 1,034,646 to 1,035,290 Atu1043 Atu1044: Atu1044 - hypothetical protein, at 1,035,287 to 1,037,935 Atu1044 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -2 -1 0 1at 1032.887 kb on + strandat 1032.947 kb on - strand, within Atu1041at 1033.031 kb on - strand, within Atu1041at 1033.040 kb on - strand, within Atu1041at 1033.203 kb on - strand, within Atu1041at 1033.239 kb on - strand, within Atu1041at 1033.249 kb on - strand, within Atu1041at 1033.337 kb on + strand, within Atu1041at 1033.345 kb on - strand, within Atu1041at 1033.427 kb on + strand, within Atu1041at 1033.427 kb on + strand, within Atu1041at 1033.771 kb on + strandat 1033.994 kb on - strand, within Atu1042at 1034.017 kb on + strand, within Atu1042at 1034.118 kb on + strand, within Atu1042at 1034.226 kb on - strand, within Atu1042at 1034.226 kb on - strand, within Atu1042at 1034.226 kb on - strand, within Atu1042at 1034.226 kb on - strand, within Atu1042at 1034.319 kb on - strand, within Atu1042at 1034.389 kb on - strand, within Atu1042at 1034.399 kb on - strand, within Atu1042at 1034.597 kb on + strandat 1034.607 kb on - strandat 1034.652 kb on - strandat 1034.685 kb on - strandat 1034.743 kb on + strand, within Atu1043at 1034.969 kb on - strand, within Atu1043at 1035.020 kb on - strand, within Atu1043at 1035.124 kb on - strand, within Atu1043at 1035.177 kb on - strand, within Atu1043at 1035.196 kb on - strand, within Atu1043at 1035.244 kb on - strandat 1035.343 kb on + strandat 1035.392 kb on - strandat 1035.392 kb on - strandat 1035.538 kb on - strandat 1035.555 kb on - strand, within Atu1044at 1035.555 kb on - strand, within Atu1044at 1035.556 kb on - strand, within Atu1044at 1035.580 kb on - strand, within Atu1044at 1035.583 kb on + strand, within Atu1044at 1035.613 kb on + strand, within Atu1044

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,032,887 + -0.1
1,032,947 - Atu1041 0.13 -0.6
1,033,031 - Atu1041 0.25 +1.2
1,033,040 - Atu1041 0.26 -0.0
1,033,203 - Atu1041 0.48 -0.1
1,033,239 - Atu1041 0.53 +0.0
1,033,249 - Atu1041 0.55 -0.2
1,033,337 + Atu1041 0.67 -0.1
1,033,345 - Atu1041 0.68 +0.6
1,033,427 + Atu1041 0.79 -0.6
1,033,427 + Atu1041 0.79 -0.3
1,033,771 + -0.5
1,033,994 - Atu1042 0.24 +0.9
1,034,017 + Atu1042 0.27 +0.1
1,034,118 + Atu1042 0.39 +0.7
1,034,226 - Atu1042 0.51 +0.2
1,034,226 - Atu1042 0.51 -0.6
1,034,226 - Atu1042 0.51 +0.1
1,034,226 - Atu1042 0.51 +0.5
1,034,319 - Atu1042 0.63 +1.0
1,034,389 - Atu1042 0.71 -1.1
1,034,399 - Atu1042 0.72 +0.1
1,034,597 + -2.4
1,034,607 - +0.4
1,034,652 - +0.7
1,034,685 - -0.0
1,034,743 + Atu1043 0.15 -0.8
1,034,969 - Atu1043 0.50 -0.1
1,035,020 - Atu1043 0.58 +0.2
1,035,124 - Atu1043 0.74 -0.1
1,035,177 - Atu1043 0.82 -0.1
1,035,196 - Atu1043 0.85 +0.4
1,035,244 - -0.5
1,035,343 + -0.3
1,035,392 - +0.1
1,035,392 - -1.5
1,035,538 - -0.7
1,035,555 - Atu1044 0.10 +0.3
1,035,555 - Atu1044 0.10 +0.3
1,035,556 - Atu1044 0.10 +0.1
1,035,580 - Atu1044 0.11 +0.1
1,035,583 + Atu1044 0.11 -0.5
1,035,613 + Atu1044 0.12 -0.5

Or see this region's nucleotide sequence