Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0883 and Atu0884 are separated by 11 nucleotides Atu0884 and Atu0885 are separated by 4 nucleotides Atu0885 and Atu0886 are separated by 104 nucleotides Atu0886 and Atu0887 are separated by 21 nucleotides
Atu0883: Atu0883 - hypothetical protein, at 878,016 to 878,198
Atu0883
Atu0884: Atu0884 - hypothetical protein, at 878,210 to 878,920
Atu0884
Atu0885: Atu0885 - hypothetical protein, at 878,925 to 879,239
Atu0885
Atu0886: Atu0886 - hypothetical protein, at 879,344 to 879,910
Atu0886
Atu0887: Atu0887 - acetyltransferase, at 879,932 to 880,420
Atu0887
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 877.991 kb on + strand at 878.124 kb on - strand, within Atu0883 at 878.135 kb on + strand, within Atu0883 at 878.143 kb on - strand, within Atu0883 at 878.413 kb on - strand, within Atu0884 at 878.417 kb on + strand, within Atu0884 at 878.543 kb on - strand, within Atu0884 at 878.717 kb on + strand, within Atu0884 at 878.724 kb on - strand, within Atu0884 at 878.740 kb on + strand, within Atu0884 at 878.748 kb on - strand, within Atu0884 at 879.067 kb on + strand, within Atu0885 at 879.094 kb on + strand, within Atu0885 at 879.158 kb on - strand, within Atu0885 at 879.212 kb on + strand at 879.257 kb on - strand at 879.283 kb on - strand at 879.293 kb on + strand at 879.390 kb on + strand at 879.580 kb on - strand, within Atu0886 at 879.801 kb on + strand, within Atu0886 at 879.953 kb on + strand at 880.134 kb on + strand, within Atu0887 at 880.144 kb on + strand, within Atu0887 at 880.178 kb on - strand, within Atu0887 at 880.181 kb on - strand, within Atu0887 at 880.218 kb on + strand, within Atu0887
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 877,991 + +0.2 878,124 - Atu0883 0.59 -0.1 878,135 + Atu0883 0.65 -1.3 878,143 - Atu0883 0.69 -0.4 878,413 - Atu0884 0.29 +0.7 878,417 + Atu0884 0.29 -0.0 878,543 - Atu0884 0.47 -1.8 878,717 + Atu0884 0.71 +0.2 878,724 - Atu0884 0.72 -0.7 878,740 + Atu0884 0.75 +0.5 878,748 - Atu0884 0.76 -0.1 879,067 + Atu0885 0.45 +0.2 879,094 + Atu0885 0.54 +1.1 879,158 - Atu0885 0.74 +0.3 879,212 + +0.4 879,257 - +0.0 879,283 - -0.3 879,293 + +0.6 879,390 + +0.2 879,580 - Atu0886 0.42 +3.1 879,801 + Atu0886 0.81 -1.0 879,953 + -1.3 880,134 + Atu0887 0.41 +0.6 880,144 + Atu0887 0.43 -0.0 880,178 - Atu0887 0.50 -0.8 880,181 - Atu0887 0.51 -0.5 880,218 + Atu0887 0.58 +0.6
Or see this region's nucleotide sequence