Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0724 and Atu0725 are separated by 63 nucleotides Atu0725 and Atu0726 are separated by 328 nucleotides
Atu0724: Atu0724 - hypothetical protein, at 724,192 to 725,169
Atu0724
Atu0725: Atu0725 - hypothetical protein, at 725,233 to 725,844
Atu0725
Atu0726: Atu0726 - ring hydroxylating dioxygenase, alpha-subunit, at 726,173 to 727,417
Atu0726
Position (kb) 725
726 Strain fitness (log2 ratio) -1
0
1
2 at 725.174 kb on - strand at 725.259 kb on + strand at 725.372 kb on - strand, within Atu0725 at 725.615 kb on - strand, within Atu0725 at 725.617 kb on + strand, within Atu0725 at 725.703 kb on + strand, within Atu0725 at 725.724 kb on + strand, within Atu0725 at 725.724 kb on + strand, within Atu0725 at 725.779 kb on - strand, within Atu0725 at 725.779 kb on - strand, within Atu0725 at 725.779 kb on - strand, within Atu0725 at 725.779 kb on - strand, within Atu0725 at 725.800 kb on - strand at 725.805 kb on - strand at 725.847 kb on - strand at 725.877 kb on + strand at 725.878 kb on + strand at 725.896 kb on - strand at 725.903 kb on + strand at 725.927 kb on + strand at 725.929 kb on + strand at 725.937 kb on - strand at 726.083 kb on + strand at 726.120 kb on - strand at 726.191 kb on + strand at 726.236 kb on - strand at 726.249 kb on - strand at 726.264 kb on - strand at 726.343 kb on + strand, within Atu0726 at 726.351 kb on - strand, within Atu0726 at 726.363 kb on + strand, within Atu0726 at 726.371 kb on - strand, within Atu0726 at 726.481 kb on + strand, within Atu0726 at 726.512 kb on - strand, within Atu0726 at 726.536 kb on + strand, within Atu0726 at 726.538 kb on + strand, within Atu0726 at 726.538 kb on + strand, within Atu0726 at 726.665 kb on + strand, within Atu0726 at 726.700 kb on + strand, within Atu0726 at 726.744 kb on - strand, within Atu0726 at 726.803 kb on - strand, within Atu0726 at 726.816 kb on + strand, within Atu0726
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 725,174 - +0.1 725,259 + +0.8 725,372 - Atu0725 0.23 +0.3 725,615 - Atu0725 0.62 +0.9 725,617 + Atu0725 0.63 -0.1 725,703 + Atu0725 0.77 +1.9 725,724 + Atu0725 0.80 +0.7 725,724 + Atu0725 0.80 +0.3 725,779 - Atu0725 0.89 +1.6 725,779 - Atu0725 0.89 +0.3 725,779 - Atu0725 0.89 -0.1 725,779 - Atu0725 0.89 -0.8 725,800 - -0.4 725,805 - -1.1 725,847 - -0.6 725,877 + +0.2 725,878 + +0.6 725,896 - -0.5 725,903 + +0.2 725,927 + +0.3 725,929 + +0.4 725,937 - -0.2 726,083 + -0.1 726,120 - +0.3 726,191 + -0.6 726,236 - -0.0 726,249 - -0.5 726,264 - +0.2 726,343 + Atu0726 0.14 -0.1 726,351 - Atu0726 0.14 -0.4 726,363 + Atu0726 0.15 -0.2 726,371 - Atu0726 0.16 -0.2 726,481 + Atu0726 0.25 +1.0 726,512 - Atu0726 0.27 +0.5 726,536 + Atu0726 0.29 -0.0 726,538 + Atu0726 0.29 -0.2 726,538 + Atu0726 0.29 +0.4 726,665 + Atu0726 0.40 -0.1 726,700 + Atu0726 0.42 +1.3 726,744 - Atu0726 0.46 +0.8 726,803 - Atu0726 0.51 -0.0 726,816 + Atu0726 0.52 -0.9
Or see this region's nucleotide sequence