Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0436 and Atu0437 overlap by 1 nucleotides Atu0437 and Atu0438 are separated by 1 nucleotides
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Atu0437: Atu0437 - hypothetical protein, at 433,149 to 433,829
Atu0437
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Position (kb) 433
434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.155 kb on - strand, within Atu0436 at 432.211 kb on + strand, within Atu0436 at 432.280 kb on + strand, within Atu0436 at 432.280 kb on + strand, within Atu0436 at 432.319 kb on + strand, within Atu0436 at 432.333 kb on + strand, within Atu0436 at 432.338 kb on + strand, within Atu0436 at 432.359 kb on + strand, within Atu0436 at 432.359 kb on + strand, within Atu0436 at 432.367 kb on - strand, within Atu0436 at 432.389 kb on + strand, within Atu0436 at 432.402 kb on - strand, within Atu0436 at 432.528 kb on + strand, within Atu0436 at 432.612 kb on + strand, within Atu0436 at 432.612 kb on + strand, within Atu0436 at 432.711 kb on + strand, within Atu0436 at 432.772 kb on + strand, within Atu0436 at 432.806 kb on - strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.858 kb on - strand, within Atu0436 at 432.861 kb on + strand, within Atu0436 at 432.876 kb on - strand, within Atu0436 at 432.878 kb on + strand, within Atu0436 at 433.333 kb on - strand, within Atu0437 at 433.346 kb on - strand, within Atu0437 at 433.516 kb on + strand, within Atu0437 at 433.519 kb on - strand, within Atu0437 at 433.574 kb on + strand, within Atu0437 at 433.633 kb on - strand, within Atu0437 at 433.653 kb on + strand, within Atu0437 at 433.846 kb on - strand at 433.866 kb on - strand at 433.875 kb on + strand at 434.003 kb on + strand, within Atu0438 at 434.013 kb on + strand, within Atu0438 at 434.166 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.354 kb on - strand, within Atu0438 at 434.382 kb on + strand, within Atu0438 at 434.389 kb on + strand, within Atu0438 at 434.392 kb on + strand, within Atu0438 at 434.395 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.418 kb on + strand, within Atu0438 at 434.450 kb on - strand, within Atu0438 at 434.507 kb on + strand, within Atu0438 at 434.573 kb on + strand, within Atu0438 at 434.575 kb on + strand, within Atu0438 at 434.583 kb on - strand, within Atu0438 at 434.600 kb on - strand, within Atu0438 at 434.612 kb on - strand, within Atu0438 at 434.663 kb on + strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.676 kb on - strand, within Atu0438 at 434.708 kb on + strand, within Atu0438 at 434.731 kb on + strand, within Atu0438 at 434.784 kb on - strand at 434.820 kb on + strand at 434.820 kb on + strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 432,155 - Atu0436 0.54 +0.2 432,211 + Atu0436 0.56 -0.2 432,280 + Atu0436 0.60 +0.7 432,280 + Atu0436 0.60 +0.0 432,319 + Atu0436 0.61 -2.5 432,333 + Atu0436 0.62 -1.3 432,338 + Atu0436 0.62 -0.7 432,359 + Atu0436 0.63 +0.3 432,359 + Atu0436 0.63 -1.2 432,367 - Atu0436 0.64 +0.3 432,389 + Atu0436 0.65 +0.9 432,402 - Atu0436 0.65 -0.8 432,528 + Atu0436 0.71 +0.9 432,612 + Atu0436 0.75 +0.3 432,612 + Atu0436 0.75 -1.2 432,711 + Atu0436 0.80 -0.9 432,772 + Atu0436 0.82 +0.1 432,806 - Atu0436 0.84 +0.5 432,850 + Atu0436 0.86 +0.6 432,850 + Atu0436 0.86 +0.5 432,858 - Atu0436 0.86 +2.1 432,861 + Atu0436 0.87 +0.1 432,876 - Atu0436 0.87 +1.6 432,878 + Atu0436 0.87 -0.5 433,333 - Atu0437 0.27 +0.2 433,346 - Atu0437 0.29 +0.6 433,516 + Atu0437 0.54 +0.4 433,519 - Atu0437 0.54 +0.4 433,574 + Atu0437 0.62 +0.1 433,633 - Atu0437 0.71 +0.2 433,653 + Atu0437 0.74 -0.1 433,846 - +0.3 433,866 - -0.2 433,875 + +0.2 434,003 + Atu0438 0.17 -0.2 434,013 + Atu0438 0.18 +0.6 434,166 + Atu0438 0.33 -1.0 434,336 + Atu0438 0.49 +0.6 434,336 + Atu0438 0.49 -0.7 434,336 + Atu0438 0.49 -0.2 434,344 - Atu0438 0.50 +0.5 434,344 - Atu0438 0.50 +0.1 434,354 - Atu0438 0.51 -1.2 434,382 + Atu0438 0.54 -0.5 434,389 + Atu0438 0.54 +0.4 434,392 + Atu0438 0.55 -0.3 434,395 - Atu0438 0.55 -0.0 434,400 - Atu0438 0.55 +0.5 434,400 - Atu0438 0.55 +1.2 434,400 - Atu0438 0.55 -0.4 434,418 + Atu0438 0.57 +0.1 434,450 - Atu0438 0.60 -0.3 434,507 + Atu0438 0.66 +0.3 434,573 + Atu0438 0.72 -0.5 434,575 + Atu0438 0.72 -1.4 434,583 - Atu0438 0.73 -0.0 434,600 - Atu0438 0.75 -1.9 434,612 - Atu0438 0.76 +0.4 434,663 + Atu0438 0.81 -0.7 434,671 - Atu0438 0.82 -0.5 434,671 - Atu0438 0.82 +0.2 434,676 - Atu0438 0.82 -0.4 434,708 + Atu0438 0.85 +0.1 434,731 + Atu0438 0.87 -0.5 434,784 - -0.5 434,820 + +0.3 434,820 + -0.9 434,821 - +1.9 434,821 - -0.1 434,821 - +0.2
Or see this region's nucleotide sequence