Strain Fitness in Agrobacterium fabrum C58 around Atu3802

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3800 and Atu3801 are separated by 95 nucleotidesAtu3801 and Atu3802 overlap by 8 nucleotidesAtu3802 and Atu3803 overlap by 8 nucleotides Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758 Atu3800 Atu3801: Atu3801 - proline/glycine betaine ABC transporter permease, at 896,854 to 897,711 Atu3801 Atu3802: Atu3802 - proline/glycine betaine ABC transporter ATPase, at 897,704 to 898,537 Atu3802 Atu3803: Atu3803 - histidine ammonia-lyase, at 898,530 to 900,032 Atu3803 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2 3at 896.724 kb on + strandat 896.760 kb on - strandat 896.797 kb on + strandat 896.802 kb on + strandat 896.805 kb on - strandat 896.843 kb on + strandat 896.851 kb on - strandat 896.912 kb on + strandat 896.930 kb on - strandat 897.009 kb on - strand, within Atu3801at 897.116 kb on + strand, within Atu3801at 897.137 kb on + strand, within Atu3801at 897.292 kb on + strand, within Atu3801at 897.298 kb on - strand, within Atu3801at 897.300 kb on - strand, within Atu3801at 897.309 kb on + strand, within Atu3801at 897.315 kb on + strand, within Atu3801at 897.403 kb on + strand, within Atu3801at 897.413 kb on - strand, within Atu3801at 897.442 kb on - strand, within Atu3801at 897.497 kb on - strand, within Atu3801at 897.522 kb on + strand, within Atu3801at 897.524 kb on + strand, within Atu3801at 897.530 kb on - strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.568 kb on - strand, within Atu3801at 897.612 kb on + strand, within Atu3801at 897.622 kb on + strand, within Atu3801at 897.671 kb on + strandat 897.761 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.773 kb on + strandat 897.781 kb on - strandat 897.876 kb on + strand, within Atu3802at 897.901 kb on + strand, within Atu3802at 897.974 kb on + strand, within Atu3802at 898.025 kb on + strand, within Atu3802at 898.026 kb on + strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.112 kb on - strand, within Atu3802at 898.126 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.264 kb on + strand, within Atu3802at 898.299 kb on + strand, within Atu3802at 898.321 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.337 kb on + strand, within Atu3802at 898.342 kb on + strand, within Atu3802at 898.355 kb on - strand, within Atu3802at 898.462 kb on - strandat 898.462 kb on - strandat 898.540 kb on - strandat 898.586 kb on + strandat 898.600 kb on + strandat 898.608 kb on - strandat 898.735 kb on + strand, within Atu3803at 898.754 kb on + strand, within Atu3803at 898.778 kb on + strand, within Atu3803at 898.824 kb on + strand, within Atu3803at 898.874 kb on + strand, within Atu3803at 898.904 kb on + strand, within Atu3803at 898.957 kb on - strand, within Atu3803at 898.978 kb on + strand, within Atu3803at 898.978 kb on + strand, within Atu3803at 898.981 kb on - strand, within Atu3803at 898.983 kb on + strand, within Atu3803at 898.986 kb on - strand, within Atu3803at 898.986 kb on - strand, within Atu3803at 898.991 kb on - strand, within Atu3803at 898.996 kb on - strand, within Atu3803at 899.049 kb on - strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.066 kb on - strand, within Atu3803at 899.096 kb on - strand, within Atu3803at 899.096 kb on - strand, within Atu3803at 899.106 kb on + strand, within Atu3803at 899.107 kb on - strand, within Atu3803at 899.119 kb on + strand, within Atu3803at 899.129 kb on + strand, within Atu3803at 899.129 kb on - strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.137 kb on - strand, within Atu3803at 899.160 kb on + strand, within Atu3803at 899.195 kb on - strand, within Atu3803at 899.197 kb on + strand, within Atu3803at 899.265 kb on + strand, within Atu3803at 899.321 kb on - strand, within Atu3803at 899.341 kb on + strand, within Atu3803at 899.341 kb on + strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.350 kb on + strand, within Atu3803at 899.350 kb on + strand, within Atu3803at 899.358 kb on - strand, within Atu3803at 899.396 kb on - strand, within Atu3803at 899.413 kb on - strand, within Atu3803at 899.418 kb on - strand, within Atu3803at 899.418 kb on - strand, within Atu3803

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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896,724 + +1.9
896,760 - +0.1
896,797 + -1.0
896,802 + +0.6
896,805 - -0.1
896,843 + +0.0
896,851 - -0.2
896,912 + +0.3
896,930 - +0.5
897,009 - Atu3801 0.18 +0.8
897,116 + Atu3801 0.31 +1.0
897,137 + Atu3801 0.33 +0.1
897,292 + Atu3801 0.51 +0.2
897,298 - Atu3801 0.52 +1.6
897,300 - Atu3801 0.52 -0.2
897,309 + Atu3801 0.53 -1.2
897,315 + Atu3801 0.54 +0.8
897,403 + Atu3801 0.64 -0.9
897,413 - Atu3801 0.65 +0.2
897,442 - Atu3801 0.69 -0.1
897,497 - Atu3801 0.75 +0.5
897,522 + Atu3801 0.78 -0.2
897,524 + Atu3801 0.78 +0.5
897,530 - Atu3801 0.79 -0.0
897,560 + Atu3801 0.82 -0.2
897,560 + Atu3801 0.82 -0.7
897,568 - Atu3801 0.83 -0.0
897,612 + Atu3801 0.88 -1.0
897,622 + Atu3801 0.90 -0.2
897,671 + -0.2
897,761 + +0.9
897,766 + +0.3
897,766 + -1.0
897,766 + +0.6
897,773 + -0.3
897,781 - +1.0
897,876 + Atu3802 0.21 -0.6
897,901 + Atu3802 0.24 +0.2
897,974 + Atu3802 0.32 -0.2
898,025 + Atu3802 0.38 -0.4
898,026 + Atu3802 0.39 -0.8
898,075 - Atu3802 0.44 -0.6
898,075 - Atu3802 0.44 -2.3
898,112 - Atu3802 0.49 -0.8
898,126 + Atu3802 0.51 +0.3
898,203 + Atu3802 0.60 -1.1
898,203 + Atu3802 0.60 +0.0
898,203 + Atu3802 0.60 -1.4
898,264 + Atu3802 0.67 +0.8
898,299 + Atu3802 0.71 -1.4
898,321 + Atu3802 0.74 +0.2
898,331 + Atu3802 0.75 -2.2
898,331 + Atu3802 0.75 -0.5
898,337 + Atu3802 0.76 -2.2
898,342 + Atu3802 0.76 -0.5
898,355 - Atu3802 0.78 -1.4
898,462 - +0.1
898,462 - -0.3
898,540 - +2.3
898,586 + -1.2
898,600 + -0.1
898,608 - +0.7
898,735 + Atu3803 0.14 -0.3
898,754 + Atu3803 0.15 -1.6
898,778 + Atu3803 0.17 +0.4
898,824 + Atu3803 0.20 +0.1
898,874 + Atu3803 0.23 +0.7
898,904 + Atu3803 0.25 -0.1
898,957 - Atu3803 0.28 -0.0
898,978 + Atu3803 0.30 +0.3
898,978 + Atu3803 0.30 +0.0
898,981 - Atu3803 0.30 +0.7
898,983 + Atu3803 0.30 +0.2
898,986 - Atu3803 0.30 +1.0
898,986 - Atu3803 0.30 +0.2
898,991 - Atu3803 0.31 -0.3
898,996 - Atu3803 0.31 +0.1
899,049 - Atu3803 0.35 +0.4
899,056 + Atu3803 0.35 +0.9
899,056 + Atu3803 0.35 -0.6
899,056 + Atu3803 0.35 +0.3
899,056 + Atu3803 0.35 +2.1
899,056 + Atu3803 0.35 +3.2
899,056 + Atu3803 0.35 -0.5
899,056 + Atu3803 0.35 -0.7
899,056 + Atu3803 0.35 -0.2
899,056 + Atu3803 0.35 +0.5
899,064 - Atu3803 0.36 +0.1
899,064 - Atu3803 0.36 -0.7
899,064 - Atu3803 0.36 -0.8
899,064 - Atu3803 0.36 -0.8
899,064 - Atu3803 0.36 +0.4
899,064 - Atu3803 0.36 +0.0
899,066 - Atu3803 0.36 -0.0
899,096 - Atu3803 0.38 +0.1
899,096 - Atu3803 0.38 -1.3
899,106 + Atu3803 0.38 +0.2
899,107 - Atu3803 0.38 -0.3
899,119 + Atu3803 0.39 +0.7
899,129 + Atu3803 0.40 -0.3
899,129 - Atu3803 0.40 -0.1
899,134 + Atu3803 0.40 -0.3
899,134 + Atu3803 0.40 -0.2
899,134 + Atu3803 0.40 -0.8
899,137 - Atu3803 0.40 +0.7
899,160 + Atu3803 0.42 -1.7
899,195 - Atu3803 0.44 +0.4
899,197 + Atu3803 0.44 -0.3
899,265 + Atu3803 0.49 +0.7
899,321 - Atu3803 0.53 +0.3
899,341 + Atu3803 0.54 +0.2
899,341 + Atu3803 0.54 +0.4
899,349 - Atu3803 0.54 -0.5
899,349 - Atu3803 0.54 +0.8
899,349 - Atu3803 0.54 -0.1
899,350 + Atu3803 0.55 +0.4
899,350 + Atu3803 0.55 -0.4
899,358 - Atu3803 0.55 +0.1
899,396 - Atu3803 0.58 -0.4
899,413 - Atu3803 0.59 +0.5
899,418 - Atu3803 0.59 -1.4
899,418 - Atu3803 0.59 -0.0

Or see this region's nucleotide sequence