Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3765 and Atu3766 are separated by 99 nucleotides Atu3766 and Atu3767 overlap by 4 nucleotides Atu3767 and Atu3768 are separated by 259 nucleotides
Atu3765: Atu3765 - oligoendopeptidase F, at 846,553 to 848,403
Atu3765
Atu3766: Atu3766 - hypothetical protein, at 848,503 to 849,138
Atu3766
Atu3767: Atu3767 - diguanylate cyclase, at 849,135 to 850,043
Atu3767
Atu3768: Atu3768 - homospermidine synthase, at 850,303 to 851,748
Atu3768
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 848.166 kb on + strand, within Atu3765 at 848.280 kb on + strand at 848.282 kb on + strand at 848.397 kb on + strand at 848.405 kb on - strand at 848.422 kb on - strand at 848.479 kb on - strand at 848.479 kb on - strand at 848.489 kb on + strand at 848.507 kb on - strand at 848.524 kb on - strand at 848.604 kb on - strand, within Atu3766 at 848.632 kb on + strand, within Atu3766 at 848.650 kb on - strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.698 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.847 kb on + strand, within Atu3766 at 848.887 kb on + strand, within Atu3766 at 848.901 kb on - strand, within Atu3766 at 848.983 kb on + strand, within Atu3766 at 848.991 kb on - strand, within Atu3766 at 849.007 kb on + strand, within Atu3766 at 849.018 kb on - strand, within Atu3766 at 849.022 kb on + strand, within Atu3766 at 849.030 kb on - strand, within Atu3766 at 849.120 kb on - strand at 849.142 kb on - strand at 849.268 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.733 kb on - strand, within Atu3767 at 849.750 kb on - strand, within Atu3767 at 849.815 kb on - strand, within Atu3767 at 849.857 kb on - strand, within Atu3767 at 849.992 kb on + strand at 849.995 kb on + strand at 850.090 kb on + strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.375 kb on - strand at 850.385 kb on + strand at 850.491 kb on + strand, within Atu3768 at 850.501 kb on + strand, within Atu3768 at 850.509 kb on - strand, within Atu3768 at 850.520 kb on + strand, within Atu3768 at 850.526 kb on - strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.550 kb on - strand, within Atu3768 at 850.552 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.571 kb on - strand, within Atu3768 at 850.745 kb on + strand, within Atu3768 at 850.782 kb on - strand, within Atu3768 at 850.804 kb on + strand, within Atu3768 at 850.812 kb on - strand, within Atu3768 at 850.830 kb on + strand, within Atu3768 at 850.838 kb on - strand, within Atu3768 at 850.895 kb on + strand, within Atu3768 at 850.903 kb on - strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.944 kb on + strand, within Atu3768 at 850.976 kb on - strand, within Atu3768 at 851.003 kb on - strand, within Atu3768
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 848,166 + Atu3765 0.87 +1.7 848,280 + -0.3 848,282 + -0.3 848,397 + -0.3 848,405 - -0.2 848,422 - +0.3 848,479 - +0.1 848,479 - -0.3 848,489 + +0.4 848,507 - +0.2 848,524 - -0.2 848,604 - Atu3766 0.16 +2.4 848,632 + Atu3766 0.20 -1.5 848,650 - Atu3766 0.23 +0.9 848,687 + Atu3766 0.29 +1.7 848,687 + Atu3766 0.29 -0.3 848,687 + Atu3766 0.29 +0.5 848,687 + Atu3766 0.29 +1.8 848,698 + Atu3766 0.31 -0.2 848,706 + Atu3766 0.32 -0.5 848,706 + Atu3766 0.32 +0.7 848,714 - Atu3766 0.33 +0.1 848,714 - Atu3766 0.33 +0.1 848,847 + Atu3766 0.54 -0.9 848,887 + Atu3766 0.60 -0.3 848,901 - Atu3766 0.63 -0.4 848,983 + Atu3766 0.75 +0.6 848,991 - Atu3766 0.77 -0.0 849,007 + Atu3766 0.79 -0.2 849,018 - Atu3766 0.81 -0.2 849,022 + Atu3766 0.82 -2.1 849,030 - Atu3766 0.83 +0.0 849,120 - -0.3 849,142 - -0.0 849,268 - Atu3767 0.15 +0.4 849,675 - Atu3767 0.59 +1.6 849,675 - Atu3767 0.59 +0.7 849,733 - Atu3767 0.66 +0.3 849,750 - Atu3767 0.68 +0.9 849,815 - Atu3767 0.75 +0.2 849,857 - Atu3767 0.79 +0.0 849,992 + +2.0 849,995 + +0.3 850,090 + +0.4 850,197 - +0.8 850,197 - -0.2 850,197 - +0.2 850,197 - -0.3 850,375 - -0.2 850,385 + -0.8 850,491 + Atu3768 0.13 -0.7 850,501 + Atu3768 0.14 -0.1 850,509 - Atu3768 0.14 +0.4 850,520 + Atu3768 0.15 +0.3 850,526 - Atu3768 0.15 +0.5 850,542 + Atu3768 0.17 +1.2 850,542 + Atu3768 0.17 +1.0 850,550 - Atu3768 0.17 -0.5 850,552 + Atu3768 0.17 -0.3 850,557 + Atu3768 0.18 -0.1 850,557 + Atu3768 0.18 -0.4 850,557 + Atu3768 0.18 -0.7 850,557 + Atu3768 0.18 +1.7 850,565 - Atu3768 0.18 +3.2 850,565 - Atu3768 0.18 +0.0 850,571 - Atu3768 0.19 +0.4 850,745 + Atu3768 0.31 -1.5 850,782 - Atu3768 0.33 +0.6 850,804 + Atu3768 0.35 -0.1 850,812 - Atu3768 0.35 +0.1 850,830 + Atu3768 0.36 +0.2 850,838 - Atu3768 0.37 +1.1 850,895 + Atu3768 0.41 -0.5 850,903 - Atu3768 0.41 +0.7 850,920 + Atu3768 0.43 -0.0 850,920 + Atu3768 0.43 +1.7 850,944 + Atu3768 0.44 -1.0 850,976 - Atu3768 0.47 +0.1 851,003 - Atu3768 0.48 +1.2
Or see this region's nucleotide sequence