Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3648 and Atu3650 are separated by 482 nucleotides Atu3650 and Atu3651 are separated by 70 nucleotides
Atu3648: Atu3648 - hypothetical protein, at 700,693 to 700,914
Atu3648
Atu3650: Atu3650 - hypothetical protein, at 701,397 to 701,972
Atu3650
Atu3651: Atu3651 - hypothetical protein, at 702,043 to 702,909
Atu3651
Position (kb) 701
702 Strain fitness (log2 ratio) -2
-1
0
1 at 700.429 kb on + strand at 700.462 kb on + strand at 700.470 kb on - strand at 700.479 kb on + strand at 700.529 kb on + strand at 700.537 kb on - strand at 700.546 kb on + strand at 700.546 kb on + strand at 700.546 kb on + strand at 700.547 kb on - strand at 700.554 kb on - strand at 700.673 kb on - strand at 700.723 kb on - strand, within Atu3648 at 700.734 kb on - strand, within Atu3648 at 700.750 kb on + strand, within Atu3648 at 700.759 kb on - strand, within Atu3648 at 700.775 kb on - strand, within Atu3648 at 700.909 kb on + strand at 700.917 kb on - strand at 700.917 kb on - strand at 700.919 kb on + strand at 700.985 kb on - strand at 701.024 kb on + strand at 701.095 kb on + strand at 701.105 kb on + strand at 701.133 kb on - strand at 701.175 kb on + strand at 701.183 kb on - strand at 701.243 kb on + strand at 701.281 kb on + strand at 701.379 kb on + strand at 701.467 kb on + strand, within Atu3650 at 701.471 kb on - strand, within Atu3650 at 701.499 kb on + strand, within Atu3650 at 701.527 kb on + strand, within Atu3650 at 701.529 kb on + strand, within Atu3650 at 701.596 kb on - strand, within Atu3650 at 701.615 kb on - strand, within Atu3650 at 701.699 kb on - strand, within Atu3650 at 701.718 kb on + strand, within Atu3650 at 701.718 kb on + strand, within Atu3650 at 701.750 kb on - strand, within Atu3650 at 701.751 kb on + strand, within Atu3650 at 701.771 kb on - strand, within Atu3650 at 701.808 kb on + strand, within Atu3650 at 701.809 kb on - strand, within Atu3650 at 701.876 kb on + strand, within Atu3650 at 701.944 kb on + strand at 702.014 kb on + strand at 702.026 kb on + strand at 702.156 kb on - strand, within Atu3651 at 702.215 kb on - strand, within Atu3651 at 702.215 kb on - strand, within Atu3651 at 702.240 kb on - strand, within Atu3651 at 702.290 kb on + strand, within Atu3651 at 702.303 kb on - strand, within Atu3651 at 702.309 kb on + strand, within Atu3651 at 702.317 kb on - strand, within Atu3651 at 702.345 kb on + strand, within Atu3651 at 702.345 kb on + strand, within Atu3651 at 702.345 kb on + strand, within Atu3651 at 702.412 kb on + strand, within Atu3651 at 702.412 kb on - strand, within Atu3651 at 702.414 kb on + strand, within Atu3651 at 702.414 kb on - strand, within Atu3651 at 702.487 kb on + strand, within Atu3651 at 702.506 kb on + strand, within Atu3651 at 702.569 kb on + strand, within Atu3651 at 702.577 kb on - strand, within Atu3651 at 702.587 kb on - strand, within Atu3651 at 702.629 kb on - strand, within Atu3651 at 702.694 kb on - strand, within Atu3651 at 702.773 kb on - strand, within Atu3651 at 702.797 kb on + strand, within Atu3651 at 702.805 kb on - strand, within Atu3651 at 702.916 kb on + strand at 702.931 kb on + strand at 702.948 kb on + strand at 702.951 kb on - strand at 702.956 kb on - strand at 702.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 700,429 + -0.5 700,462 + +1.7 700,470 - -0.2 700,479 + +0.6 700,529 + -1.0 700,537 - +0.3 700,546 + +0.8 700,546 + +1.5 700,546 + -0.3 700,547 - -0.3 700,554 - -0.9 700,673 - +0.6 700,723 - Atu3648 0.14 +0.4 700,734 - Atu3648 0.18 +0.7 700,750 + Atu3648 0.26 +1.7 700,759 - Atu3648 0.30 +0.6 700,775 - Atu3648 0.37 +0.3 700,909 + +1.0 700,917 - +0.5 700,917 - +0.1 700,919 + +0.3 700,985 - +0.9 701,024 + -1.2 701,095 + -0.3 701,105 + -2.1 701,133 - +1.2 701,175 + +0.0 701,183 - -0.5 701,243 + -0.0 701,281 + +0.1 701,379 + -0.3 701,467 + Atu3650 0.12 +0.1 701,471 - Atu3650 0.13 +0.6 701,499 + Atu3650 0.18 +0.1 701,527 + Atu3650 0.23 -0.8 701,529 + Atu3650 0.23 +1.3 701,596 - Atu3650 0.35 -0.4 701,615 - Atu3650 0.38 -1.8 701,699 - Atu3650 0.52 -0.6 701,718 + Atu3650 0.56 -1.2 701,718 + Atu3650 0.56 +0.6 701,750 - Atu3650 0.61 -2.0 701,751 + Atu3650 0.61 +0.1 701,771 - Atu3650 0.65 +0.5 701,808 + Atu3650 0.71 -0.4 701,809 - Atu3650 0.72 -1.1 701,876 + Atu3650 0.83 -0.2 701,944 + +0.3 702,014 + +0.0 702,026 + -0.5 702,156 - Atu3651 0.13 +1.0 702,215 - Atu3651 0.20 -0.7 702,215 - Atu3651 0.20 -0.3 702,240 - Atu3651 0.23 +0.0 702,290 + Atu3651 0.28 +0.3 702,303 - Atu3651 0.30 -0.3 702,309 + Atu3651 0.31 -1.1 702,317 - Atu3651 0.32 -1.0 702,345 + Atu3651 0.35 +0.1 702,345 + Atu3651 0.35 +0.1 702,345 + Atu3651 0.35 +0.1 702,412 + Atu3651 0.43 -0.3 702,412 - Atu3651 0.43 +1.7 702,414 + Atu3651 0.43 +0.1 702,414 - Atu3651 0.43 -0.3 702,487 + Atu3651 0.51 +0.1 702,506 + Atu3651 0.53 -0.7 702,569 + Atu3651 0.61 -2.3 702,577 - Atu3651 0.62 -0.6 702,587 - Atu3651 0.63 +0.8 702,629 - Atu3651 0.68 -0.5 702,694 - Atu3651 0.75 -0.3 702,773 - Atu3651 0.84 +0.3 702,797 + Atu3651 0.87 +0.1 702,805 - Atu3651 0.88 +0.5 702,916 + -0.3 702,931 + -2.2 702,948 + +0.4 702,951 - -0.1 702,956 - -0.4 702,965 - -1.8
Or see this region's nucleotide sequence