Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3133 and Atu3134 are separated by 212 nucleotides Atu3134 and Atu3135 are separated by 29 nucleotides
Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944
Atu3133
Atu3134: Atu3134 - AraC family transcriptional regulator, at 142,157 to 143,083
Atu3134
Atu3135: Atu3135 - ABC transporter permease, at 143,113 to 144,393
Atu3135
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 141.207 kb on + strand, within Atu3133 at 141.210 kb on - strand, within Atu3133 at 141.325 kb on + strand, within Atu3133 at 141.359 kb on + strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.367 kb on - strand, within Atu3133 at 141.386 kb on - strand, within Atu3133 at 141.473 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.735 kb on - strand, within Atu3133 at 141.827 kb on + strand, within Atu3133 at 141.835 kb on - strand, within Atu3133 at 141.848 kb on + strand, within Atu3133 at 142.209 kb on + strand at 142.217 kb on - strand at 142.289 kb on + strand, within Atu3134 at 142.296 kb on - strand, within Atu3134 at 142.297 kb on - strand, within Atu3134 at 142.299 kb on + strand, within Atu3134 at 142.307 kb on - strand, within Atu3134 at 142.352 kb on - strand, within Atu3134 at 142.379 kb on + strand, within Atu3134 at 142.548 kb on - strand, within Atu3134 at 142.564 kb on - strand, within Atu3134 at 142.609 kb on - strand, within Atu3134 at 142.614 kb on + strand, within Atu3134 at 142.696 kb on + strand, within Atu3134 at 142.704 kb on - strand, within Atu3134 at 142.742 kb on - strand, within Atu3134 at 142.962 kb on + strand, within Atu3134 at 143.039 kb on + strand at 143.175 kb on + strand at 143.264 kb on + strand, within Atu3135 at 143.414 kb on + strand, within Atu3135 at 143.513 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.756 kb on + strand, within Atu3135 at 143.787 kb on + strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.933 kb on - strand, within Atu3135 at 143.990 kb on + strand, within Atu3135 at 143.998 kb on - strand, within Atu3135 at 144.039 kb on - strand, within Atu3135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 141,207 + Atu3133 0.16 -0.2 141,210 - Atu3133 0.17 -2.7 141,325 + Atu3133 0.30 +0.3 141,359 + Atu3133 0.34 +0.6 141,366 - Atu3133 0.34 -0.4 141,366 - Atu3133 0.34 -0.7 141,367 - Atu3133 0.34 +0.3 141,386 - Atu3133 0.37 -1.5 141,473 + Atu3133 0.46 -0.5 141,727 + Atu3133 0.75 -0.1 141,727 + Atu3133 0.75 -0.3 141,735 - Atu3133 0.76 +0.9 141,827 + Atu3133 0.87 +0.8 141,835 - Atu3133 0.88 -1.1 141,848 + Atu3133 0.89 -1.0 142,209 + -1.0 142,217 - +0.6 142,289 + Atu3134 0.14 +0.1 142,296 - Atu3134 0.15 +0.1 142,297 - Atu3134 0.15 -0.4 142,299 + Atu3134 0.15 +1.2 142,307 - Atu3134 0.16 -0.4 142,352 - Atu3134 0.21 +1.4 142,379 + Atu3134 0.24 +0.3 142,548 - Atu3134 0.42 +0.7 142,564 - Atu3134 0.44 +1.4 142,609 - Atu3134 0.49 +0.5 142,614 + Atu3134 0.49 +1.4 142,696 + Atu3134 0.58 +0.6 142,704 - Atu3134 0.59 +0.5 142,742 - Atu3134 0.63 +0.4 142,962 + Atu3134 0.87 +0.4 143,039 + +0.1 143,175 + -0.2 143,264 + Atu3135 0.12 +0.2 143,414 + Atu3135 0.23 +3.6 143,513 - Atu3135 0.31 +0.1 143,656 - Atu3135 0.42 -0.3 143,656 - Atu3135 0.42 +0.6 143,756 + Atu3135 0.50 +0.2 143,787 + Atu3135 0.53 +0.9 143,809 - Atu3135 0.54 +0.4 143,809 - Atu3135 0.54 +0.0 143,933 - Atu3135 0.64 +0.2 143,990 + Atu3135 0.68 -1.8 143,998 - Atu3135 0.69 -0.4 144,039 - Atu3135 0.72 +0.2
Or see this region's nucleotide sequence