Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3112 and Atu3113 overlap by 8 nucleotides Atu3113 and Atu3114 are separated by 72 nucleotides Atu3114 and Atu3115 are separated by 117 nucleotides
Atu3112: Atu3112 - sugar ABC transporter permease, at 121,831 to 122,706
Atu3112
Atu3113: Atu3113 - sugar ABC transporter permease, at 122,699 to 123,586
Atu3113
Atu3114: Atu3114 - sugar ABC transporter substrate-binding protein, at 123,659 to 124,948
Atu3114
Atu3115: Atu3115 - TetR family transcriptional regulator, at 125,066 to 125,764
Atu3115
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 122.746 kb on - strand at 122.753 kb on - strand at 122.785 kb on + strand at 122.813 kb on + strand, within Atu3113 at 122.839 kb on - strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on + strand, within Atu3113 at 122.841 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.849 kb on - strand, within Atu3113 at 122.907 kb on + strand, within Atu3113 at 122.930 kb on - strand, within Atu3113 at 122.966 kb on + strand, within Atu3113 at 122.971 kb on + strand, within Atu3113 at 122.984 kb on - strand, within Atu3113 at 123.002 kb on - strand, within Atu3113 at 123.033 kb on - strand, within Atu3113 at 123.235 kb on + strand, within Atu3113 at 123.243 kb on - strand, within Atu3113 at 123.280 kb on + strand, within Atu3113 at 123.288 kb on - strand, within Atu3113 at 123.288 kb on - strand, within Atu3113 at 123.340 kb on - strand, within Atu3113 at 123.441 kb on - strand, within Atu3113 at 123.441 kb on - strand, within Atu3113 at 123.511 kb on - strand at 123.993 kb on + strand, within Atu3114 at 124.026 kb on - strand, within Atu3114 at 124.026 kb on - strand, within Atu3114 at 124.086 kb on + strand, within Atu3114 at 124.140 kb on - strand, within Atu3114 at 124.179 kb on + strand, within Atu3114 at 124.245 kb on - strand, within Atu3114 at 124.251 kb on + strand, within Atu3114 at 124.264 kb on - strand, within Atu3114 at 124.284 kb on - strand, within Atu3114 at 124.284 kb on - strand, within Atu3114 at 124.343 kb on + strand, within Atu3114 at 124.348 kb on + strand, within Atu3114 at 124.457 kb on - strand, within Atu3114 at 124.501 kb on - strand, within Atu3114 at 124.538 kb on - strand, within Atu3114 at 124.550 kb on - strand, within Atu3114 at 124.875 kb on + strand at 124.916 kb on + strand at 125.190 kb on - strand, within Atu3115 at 125.216 kb on + strand, within Atu3115 at 125.542 kb on + strand, within Atu3115 at 125.592 kb on + strand, within Atu3115 at 125.612 kb on + strand, within Atu3115 at 125.655 kb on + strand, within Atu3115 at 125.663 kb on - strand, within Atu3115 at 125.717 kb on + strand at 125.717 kb on + strand at 125.717 kb on + strand at 125.725 kb on - strand at 125.725 kb on - strand at 125.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 122,746 - -0.2 122,753 - +0.5 122,785 + +0.2 122,813 + Atu3113 0.13 -0.0 122,839 - Atu3113 0.16 +0.9 122,841 + Atu3113 0.16 +0.3 122,841 + Atu3113 0.16 +0.3 122,841 + Atu3113 0.16 +0.7 122,841 + Atu3113 0.16 -1.3 122,841 + Atu3113 0.16 +0.5 122,841 + Atu3113 0.16 +0.1 122,841 + Atu3113 0.16 -0.2 122,841 - Atu3113 0.16 +0.2 122,849 - Atu3113 0.17 +1.6 122,849 - Atu3113 0.17 -1.5 122,849 - Atu3113 0.17 +0.2 122,849 - Atu3113 0.17 -0.3 122,849 - Atu3113 0.17 +0.7 122,849 - Atu3113 0.17 -0.3 122,907 + Atu3113 0.23 +0.6 122,930 - Atu3113 0.26 +3.5 122,966 + Atu3113 0.30 +0.1 122,971 + Atu3113 0.31 -0.3 122,984 - Atu3113 0.32 +0.3 123,002 - Atu3113 0.34 +0.5 123,033 - Atu3113 0.38 -1.0 123,235 + Atu3113 0.60 -0.4 123,243 - Atu3113 0.61 +0.2 123,280 + Atu3113 0.65 +0.9 123,288 - Atu3113 0.66 +0.7 123,288 - Atu3113 0.66 +0.7 123,340 - Atu3113 0.72 +1.5 123,441 - Atu3113 0.84 -0.6 123,441 - Atu3113 0.84 -0.1 123,511 - +1.0 123,993 + Atu3114 0.26 -0.9 124,026 - Atu3114 0.28 -0.7 124,026 - Atu3114 0.28 +0.8 124,086 + Atu3114 0.33 +0.5 124,140 - Atu3114 0.37 -1.0 124,179 + Atu3114 0.40 -0.7 124,245 - Atu3114 0.45 +0.6 124,251 + Atu3114 0.46 +0.9 124,264 - Atu3114 0.47 -0.1 124,284 - Atu3114 0.48 +0.7 124,284 - Atu3114 0.48 +0.1 124,343 + Atu3114 0.53 -0.0 124,348 + Atu3114 0.53 +0.2 124,457 - Atu3114 0.62 -0.6 124,501 - Atu3114 0.65 -0.0 124,538 - Atu3114 0.68 +1.8 124,550 - Atu3114 0.69 -0.5 124,875 + +0.2 124,916 + -0.7 125,190 - Atu3115 0.18 -1.3 125,216 + Atu3115 0.21 -1.0 125,542 + Atu3115 0.68 -0.4 125,592 + Atu3115 0.75 +0.1 125,612 + Atu3115 0.78 -0.1 125,655 + Atu3115 0.84 +0.1 125,663 - Atu3115 0.85 +2.3 125,717 + +0.0 125,717 + -0.7 125,717 + -0.7 125,725 - -0.7 125,725 - -2.0 125,903 + +0.3
Or see this region's nucleotide sequence