Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6031 and Atu6032 are separated by 12 nucleotides Atu6032 and Atu6033 overlap by 1 nucleotides Atu6033 and Atu6034 are separated by 17 nucleotides
Atu6031: Atu6031 - conjugal transfer protein, at 41,570 to 42,886
Atu6031
Atu6032: Atu6032 - conjugal transfer protein, at 42,899 to 43,375
Atu6032
Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229
Atu6033
Atu6034: Atu6034 - conjugal transfer protein, at 44,247 to 44,909
Atu6034
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.905 kb on - strand, within Atu6031 at 41.924 kb on + strand, within Atu6031 at 41.962 kb on - strand, within Atu6031 at 41.972 kb on - strand, within Atu6031 at 42.003 kb on - strand, within Atu6031 at 42.003 kb on - strand, within Atu6031 at 42.046 kb on + strand, within Atu6031 at 42.046 kb on - strand, within Atu6031 at 42.064 kb on - strand, within Atu6031 at 42.071 kb on - strand, within Atu6031 at 42.101 kb on + strand, within Atu6031 at 42.115 kb on + strand, within Atu6031 at 42.151 kb on + strand, within Atu6031 at 42.159 kb on - strand, within Atu6031 at 42.187 kb on + strand, within Atu6031 at 42.195 kb on - strand, within Atu6031 at 42.264 kb on - strand, within Atu6031 at 42.276 kb on + strand, within Atu6031 at 42.276 kb on + strand, within Atu6031 at 42.283 kb on + strand, within Atu6031 at 42.298 kb on + strand, within Atu6031 at 42.300 kb on - strand, within Atu6031 at 42.309 kb on + strand, within Atu6031 at 42.398 kb on + strand, within Atu6031 at 42.398 kb on + strand, within Atu6031 at 42.406 kb on - strand, within Atu6031 at 42.458 kb on + strand, within Atu6031 at 42.500 kb on - strand, within Atu6031 at 42.591 kb on + strand, within Atu6031 at 42.625 kb on + strand, within Atu6031 at 42.649 kb on + strand, within Atu6031 at 42.655 kb on - strand, within Atu6031 at 42.655 kb on - strand, within Atu6031 at 42.660 kb on + strand, within Atu6031 at 42.660 kb on + strand, within Atu6031 at 42.668 kb on - strand, within Atu6031 at 42.680 kb on + strand, within Atu6031 at 42.745 kb on + strand, within Atu6031 at 42.856 kb on - strand at 42.856 kb on - strand at 42.894 kb on - strand at 42.894 kb on - strand at 42.916 kb on - strand at 43.049 kb on - strand, within Atu6032 at 43.086 kb on + strand, within Atu6032 at 43.086 kb on + strand, within Atu6032 at 43.094 kb on - strand, within Atu6032 at 43.099 kb on - strand, within Atu6032 at 43.100 kb on + strand, within Atu6032 at 43.134 kb on + strand, within Atu6032 at 43.152 kb on - strand, within Atu6032 at 43.170 kb on + strand, within Atu6032 at 43.272 kb on - strand, within Atu6032 at 43.277 kb on + strand, within Atu6032 at 43.310 kb on + strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.324 kb on - strand, within Atu6032 at 43.383 kb on - strand at 43.429 kb on + strand at 43.437 kb on - strand at 43.448 kb on + strand at 43.509 kb on - strand, within Atu6033 at 43.589 kb on + strand, within Atu6033 at 43.629 kb on - strand, within Atu6033 at 43.725 kb on - strand, within Atu6033 at 43.781 kb on + strand, within Atu6033 at 43.808 kb on + strand, within Atu6033 at 43.818 kb on + strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.883 kb on + strand, within Atu6033 at 43.891 kb on + strand, within Atu6033 at 44.010 kb on + strand, within Atu6033 at 44.010 kb on - strand, within Atu6033 at 44.018 kb on - strand, within Atu6033 at 44.095 kb on + strand, within Atu6033 at 44.260 kb on + strand at 44.279 kb on + strand at 44.279 kb on + strand at 44.287 kb on - strand at 44.327 kb on + strand, within Atu6034
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 41,905 - Atu6031 0.25 +0.5 41,924 + Atu6031 0.27 +0.3 41,962 - Atu6031 0.30 +0.1 41,972 - Atu6031 0.31 +0.5 42,003 - Atu6031 0.33 -1.0 42,003 - Atu6031 0.33 -0.6 42,046 + Atu6031 0.36 +0.4 42,046 - Atu6031 0.36 -0.7 42,064 - Atu6031 0.38 -0.4 42,071 - Atu6031 0.38 +0.7 42,101 + Atu6031 0.40 -0.8 42,115 + Atu6031 0.41 -0.1 42,151 + Atu6031 0.44 +0.4 42,159 - Atu6031 0.45 +0.2 42,187 + Atu6031 0.47 +0.1 42,195 - Atu6031 0.47 +0.3 42,264 - Atu6031 0.53 -1.8 42,276 + Atu6031 0.54 +0.2 42,276 + Atu6031 0.54 -0.4 42,283 + Atu6031 0.54 -1.6 42,298 + Atu6031 0.55 -0.0 42,300 - Atu6031 0.55 +0.2 42,309 + Atu6031 0.56 -1.1 42,398 + Atu6031 0.63 -0.1 42,398 + Atu6031 0.63 -2.1 42,406 - Atu6031 0.63 +0.4 42,458 + Atu6031 0.67 +0.3 42,500 - Atu6031 0.71 -0.2 42,591 + Atu6031 0.78 -0.2 42,625 + Atu6031 0.80 +1.8 42,649 + Atu6031 0.82 +0.8 42,655 - Atu6031 0.82 +0.3 42,655 - Atu6031 0.82 +0.1 42,660 + Atu6031 0.83 -0.0 42,660 + Atu6031 0.83 +1.6 42,668 - Atu6031 0.83 +0.4 42,680 + Atu6031 0.84 +1.0 42,745 + Atu6031 0.89 -0.5 42,856 - -0.8 42,856 - +0.2 42,894 - +0.2 42,894 - +1.1 42,916 - -0.5 43,049 - Atu6032 0.31 +0.2 43,086 + Atu6032 0.39 -0.7 43,086 + Atu6032 0.39 -0.1 43,094 - Atu6032 0.41 +1.3 43,099 - Atu6032 0.42 +0.0 43,100 + Atu6032 0.42 +0.7 43,134 + Atu6032 0.49 +0.7 43,152 - Atu6032 0.53 +0.6 43,170 + Atu6032 0.57 -1.6 43,272 - Atu6032 0.78 +1.0 43,277 + Atu6032 0.79 -1.2 43,310 + Atu6032 0.86 +0.0 43,311 - Atu6032 0.86 -0.0 43,311 - Atu6032 0.86 +1.2 43,311 - Atu6032 0.86 -0.9 43,324 - Atu6032 0.89 +0.3 43,383 - -0.0 43,429 + +0.1 43,437 - -0.3 43,448 + -0.6 43,509 - Atu6033 0.16 -0.6 43,589 + Atu6033 0.25 +0.4 43,629 - Atu6033 0.30 +0.0 43,725 - Atu6033 0.41 -0.2 43,781 + Atu6033 0.47 +1.0 43,808 + Atu6033 0.51 +0.5 43,818 + Atu6033 0.52 -0.4 43,826 - Atu6033 0.53 -0.1 43,826 - Atu6033 0.53 -1.1 43,883 + Atu6033 0.59 +1.0 43,891 + Atu6033 0.60 +1.2 44,010 + Atu6033 0.74 +0.3 44,010 - Atu6033 0.74 -0.7 44,018 - Atu6033 0.75 +1.0 44,095 + Atu6033 0.84 -0.7 44,260 + -0.6 44,279 + -0.0 44,279 + +0.2 44,287 - -0.0 44,327 + Atu6034 0.12 +0.9
Or see this region's nucleotide sequence