Strain Fitness in Agrobacterium fabrum C58 around Atu3670

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3669 and Atu3670 are separated by 31 nucleotidesAtu3670 and Atu3671 are separated by 10 nucleotides Atu3669: Atu3669 - siderophore biosynthesis protein, at 716,694 to 718,055 Atu3669 Atu3670: Atu3670 - siderophore biosynthesis protein, at 718,087 to 721,473 Atu3670 Atu3671: Atu3671 - siderophore biosynthesis protein, at 721,484 to 722,551 Atu3671 Position (kb) 718 719 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 717.148 kb on + strand, within Atu3669at 717.208 kb on - strand, within Atu3669at 717.216 kb on + strand, within Atu3669at 717.269 kb on + strand, within Atu3669at 717.321 kb on + strand, within Atu3669at 717.334 kb on + strand, within Atu3669at 717.342 kb on - strand, within Atu3669at 717.342 kb on - strand, within Atu3669at 717.443 kb on + strand, within Atu3669at 717.535 kb on - strand, within Atu3669at 717.554 kb on - strand, within Atu3669at 717.560 kb on + strand, within Atu3669at 717.648 kb on - strand, within Atu3669at 717.688 kb on - strand, within Atu3669at 717.712 kb on - strand, within Atu3669at 717.714 kb on - strand, within Atu3669at 717.714 kb on - strand, within Atu3669at 717.856 kb on - strand, within Atu3669at 717.995 kb on + strandat 718.052 kb on - strandat 718.062 kb on + strandat 718.169 kb on + strandat 718.184 kb on + strandat 718.232 kb on - strandat 718.271 kb on - strandat 718.388 kb on - strandat 718.470 kb on - strand, within Atu3670at 718.533 kb on + strand, within Atu3670at 718.555 kb on + strand, within Atu3670at 718.575 kb on + strand, within Atu3670at 718.594 kb on - strand, within Atu3670at 718.602 kb on - strand, within Atu3670at 718.623 kb on - strand, within Atu3670at 718.625 kb on - strand, within Atu3670at 718.633 kb on + strand, within Atu3670at 718.682 kb on + strand, within Atu3670at 718.808 kb on - strand, within Atu3670at 718.909 kb on + strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.994 kb on - strand, within Atu3670at 719.002 kb on - strand, within Atu3670at 719.007 kb on - strand, within Atu3670at 719.098 kb on + strand, within Atu3670at 719.108 kb on + strand, within Atu3670at 719.134 kb on + strand, within Atu3670at 719.203 kb on + strand, within Atu3670at 719.270 kb on + strand, within Atu3670at 719.298 kb on + strand, within Atu3670at 719.435 kb on - strand, within Atu3670at 719.449 kb on - strand, within Atu3670at 719.474 kb on + strand, within Atu3670at 719.482 kb on - strand, within Atu3670at 719.500 kb on + strand, within Atu3670at 719.500 kb on + strand, within Atu3670at 719.500 kb on + strand, within Atu3670at 719.518 kb on - strand, within Atu3670at 719.626 kb on + strand, within Atu3670at 719.634 kb on + strand, within Atu3670at 719.746 kb on + strand, within Atu3670at 719.800 kb on - strand, within Atu3670at 719.849 kb on + strand, within Atu3670at 719.855 kb on + strand, within Atu3670at 719.857 kb on - strand, within Atu3670at 719.933 kb on + strand, within Atu3670at 719.938 kb on + strand, within Atu3670at 719.941 kb on - strand, within Atu3670at 719.946 kb on - strand, within Atu3670at 719.982 kb on - strand, within Atu3670at 719.982 kb on - strand, within Atu3670at 720.014 kb on + strand, within Atu3670at 720.103 kb on - strand, within Atu3670at 720.148 kb on + strand, within Atu3670at 720.156 kb on - strand, within Atu3670at 720.204 kb on + strand, within Atu3670at 720.206 kb on - strand, within Atu3670at 720.206 kb on - strand, within Atu3670at 720.224 kb on - strand, within Atu3670at 720.226 kb on + strand, within Atu3670at 720.229 kb on - strand, within Atu3670at 720.234 kb on - strand, within Atu3670at 720.238 kb on + strand, within Atu3670at 720.239 kb on - strand, within Atu3670at 720.255 kb on + strand, within Atu3670at 720.263 kb on - strand, within Atu3670at 720.265 kb on - strand, within Atu3670at 720.265 kb on - strand, within Atu3670at 720.265 kb on - strand, within Atu3670at 720.343 kb on - strand, within Atu3670at 720.379 kb on + strand, within Atu3670at 720.393 kb on + strand, within Atu3670at 720.406 kb on - strand, within Atu3670at 720.455 kb on - strand, within Atu3670at 720.542 kb on + strand, within Atu3670at 720.542 kb on + strand, within Atu3670at 720.542 kb on + strand, within Atu3670at 720.542 kb on + strand, within Atu3670at 720.550 kb on - strand, within Atu3670at 720.550 kb on - strand, within Atu3670at 720.550 kb on - strand, within Atu3670at 720.728 kb on - strand, within Atu3670at 720.771 kb on + strand, within Atu3670at 720.772 kb on - strand, within Atu3670at 720.866 kb on + strand, within Atu3670at 720.874 kb on - strand, within Atu3670at 720.891 kb on + strand, within Atu3670at 720.968 kb on - strand, within Atu3670at 721.003 kb on - strand, within Atu3670at 721.016 kb on + strand, within Atu3670at 721.058 kb on + strand, within Atu3670at 721.095 kb on + strand, within Atu3670at 721.195 kb on - strandat 721.239 kb on + strandat 721.239 kb on + strandat 721.243 kb on + strandat 721.247 kb on - strandat 721.251 kb on - strandat 721.303 kb on + strandat 721.369 kb on - strandat 721.441 kb on + strandat 721.489 kb on - strandat 721.553 kb on + strandat 721.616 kb on - strand, within Atu3671at 721.631 kb on - strand, within Atu3671at 721.646 kb on + strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.654 kb on - strand, within Atu3671at 721.656 kb on + strand, within Atu3671at 721.664 kb on - strand, within Atu3671at 721.741 kb on + strand, within Atu3671at 721.741 kb on + strand, within Atu3671at 721.784 kb on + strand, within Atu3671at 721.825 kb on + strand, within Atu3671at 721.870 kb on - strand, within Atu3671at 722.007 kb on + strand, within Atu3671at 722.048 kb on - strand, within Atu3671at 722.067 kb on + strand, within Atu3671at 722.115 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.152 kb on + strand, within Atu3671at 722.160 kb on - strand, within Atu3671at 722.160 kb on - strand, within Atu3671at 722.197 kb on - strand, within Atu3671at 722.266 kb on + strand, within Atu3671at 722.339 kb on + strand, within Atu3671at 722.347 kb on - strand, within Atu3671at 722.347 kb on - strand, within Atu3671at 722.358 kb on + strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.366 kb on - strand, within Atu3671at 722.373 kb on + strand, within Atu3671at 722.381 kb on - strand, within Atu3671at 722.402 kb on - strand, within Atu3671

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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717,148 + Atu3669 0.33 -1.5
717,208 - Atu3669 0.38 +0.0
717,216 + Atu3669 0.38 -1.8
717,269 + Atu3669 0.42 -1.5
717,321 + Atu3669 0.46 -0.1
717,334 + Atu3669 0.47 +0.0
717,342 - Atu3669 0.48 -1.8
717,342 - Atu3669 0.48 -0.8
717,443 + Atu3669 0.55 -0.9
717,535 - Atu3669 0.62 -0.1
717,554 - Atu3669 0.63 -1.1
717,560 + Atu3669 0.64 -0.4
717,648 - Atu3669 0.70 +1.5
717,688 - Atu3669 0.73 -0.4
717,712 - Atu3669 0.75 -0.7
717,714 - Atu3669 0.75 +0.1
717,714 - Atu3669 0.75 +0.8
717,856 - Atu3669 0.85 -1.5
717,995 + -0.3
718,052 - -0.3
718,062 + -1.8
718,169 + -0.1
718,184 + -0.3
718,232 - +0.7
718,271 - +0.5
718,388 - +1.5
718,470 - Atu3670 0.11 +0.5
718,533 + Atu3670 0.13 +0.1
718,555 + Atu3670 0.14 -0.2
718,575 + Atu3670 0.14 -2.3
718,594 - Atu3670 0.15 +0.6
718,602 - Atu3670 0.15 +0.5
718,623 - Atu3670 0.16 -0.6
718,625 - Atu3670 0.16 -1.8
718,633 + Atu3670 0.16 -1.0
718,682 + Atu3670 0.18 -0.8
718,808 - Atu3670 0.21 -0.2
718,909 + Atu3670 0.24 +1.2
718,922 - Atu3670 0.25 -0.5
718,922 - Atu3670 0.25 +0.9
718,922 - Atu3670 0.25 +2.6
718,994 - Atu3670 0.27 -0.1
719,002 - Atu3670 0.27 -0.8
719,007 - Atu3670 0.27 +0.2
719,098 + Atu3670 0.30 -1.0
719,108 + Atu3670 0.30 +0.9
719,134 + Atu3670 0.31 +0.1
719,203 + Atu3670 0.33 -1.5
719,270 + Atu3670 0.35 -0.9
719,298 + Atu3670 0.36 -1.0
719,435 - Atu3670 0.40 -1.3
719,449 - Atu3670 0.40 +2.6
719,474 + Atu3670 0.41 -2.3
719,482 - Atu3670 0.41 +0.2
719,500 + Atu3670 0.42 -0.4
719,500 + Atu3670 0.42 +0.6
719,500 + Atu3670 0.42 +0.6
719,518 - Atu3670 0.42 -0.1
719,626 + Atu3670 0.45 +0.3
719,634 + Atu3670 0.46 +0.9
719,746 + Atu3670 0.49 -1.2
719,800 - Atu3670 0.51 +0.7
719,849 + Atu3670 0.52 +0.3
719,855 + Atu3670 0.52 -0.4
719,857 - Atu3670 0.52 +0.3
719,933 + Atu3670 0.55 -0.6
719,938 + Atu3670 0.55 -1.9
719,941 - Atu3670 0.55 -0.8
719,946 - Atu3670 0.55 -0.2
719,982 - Atu3670 0.56 -1.6
719,982 - Atu3670 0.56 -0.6
720,014 + Atu3670 0.57 -0.9
720,103 - Atu3670 0.60 -0.4
720,148 + Atu3670 0.61 -0.8
720,156 - Atu3670 0.61 -0.5
720,204 + Atu3670 0.63 -0.9
720,206 - Atu3670 0.63 +0.4
720,206 - Atu3670 0.63 -0.1
720,224 - Atu3670 0.63 +0.3
720,226 + Atu3670 0.63 -0.2
720,229 - Atu3670 0.63 +0.1
720,234 - Atu3670 0.63 -0.8
720,238 + Atu3670 0.64 +0.1
720,239 - Atu3670 0.64 -0.4
720,255 + Atu3670 0.64 -1.0
720,263 - Atu3670 0.64 -0.1
720,265 - Atu3670 0.64 -0.6
720,265 - Atu3670 0.64 -0.7
720,265 - Atu3670 0.64 -0.6
720,343 - Atu3670 0.67 +0.3
720,379 + Atu3670 0.68 +1.4
720,393 + Atu3670 0.68 +0.3
720,406 - Atu3670 0.68 -0.0
720,455 - Atu3670 0.70 -0.0
720,542 + Atu3670 0.72 -0.2
720,542 + Atu3670 0.72 +0.2
720,542 + Atu3670 0.72 +0.6
720,542 + Atu3670 0.72 +0.4
720,550 - Atu3670 0.73 -0.6
720,550 - Atu3670 0.73 -0.4
720,550 - Atu3670 0.73 -0.2
720,728 - Atu3670 0.78 +0.0
720,771 + Atu3670 0.79 -0.3
720,772 - Atu3670 0.79 +0.5
720,866 + Atu3670 0.82 -0.3
720,874 - Atu3670 0.82 -0.9
720,891 + Atu3670 0.83 -0.9
720,968 - Atu3670 0.85 +0.8
721,003 - Atu3670 0.86 -0.2
721,016 + Atu3670 0.86 -1.4
721,058 + Atu3670 0.88 -0.8
721,095 + Atu3670 0.89 -0.9
721,195 - +0.6
721,239 + -0.3
721,239 + +1.7
721,243 + -2.1
721,247 - -0.6
721,251 - +0.3
721,303 + +0.5
721,369 - +1.2
721,441 + -0.4
721,489 - -0.8
721,553 + -1.1
721,616 - Atu3671 0.12 +0.3
721,631 - Atu3671 0.14 +0.4
721,646 + Atu3671 0.15 -1.1
721,654 - Atu3671 0.16 -0.1
721,654 - Atu3671 0.16 +0.2
721,654 - Atu3671 0.16 +0.3
721,654 - Atu3671 0.16 -1.0
721,656 + Atu3671 0.16 -0.3
721,664 - Atu3671 0.17 -0.9
721,741 + Atu3671 0.24 -0.3
721,741 + Atu3671 0.24 -1.6
721,784 + Atu3671 0.28 -0.2
721,825 + Atu3671 0.32 -0.3
721,870 - Atu3671 0.36 -1.4
722,007 + Atu3671 0.49 -0.2
722,048 - Atu3671 0.53 -0.2
722,067 + Atu3671 0.55 -1.9
722,115 + Atu3671 0.59 +0.7
722,152 + Atu3671 0.63 -0.1
722,152 + Atu3671 0.63 +2.2
722,152 + Atu3671 0.63 +0.0
722,152 + Atu3671 0.63 +1.0
722,152 + Atu3671 0.63 -0.5
722,152 + Atu3671 0.63 +0.5
722,160 - Atu3671 0.63 -0.4
722,160 - Atu3671 0.63 +0.4
722,197 - Atu3671 0.67 -0.6
722,266 + Atu3671 0.73 +1.6
722,339 + Atu3671 0.80 +0.3
722,347 - Atu3671 0.81 -0.1
722,347 - Atu3671 0.81 -1.3
722,358 + Atu3671 0.82 -1.1
722,366 - Atu3671 0.83 +0.1
722,366 - Atu3671 0.83 -1.0
722,366 - Atu3671 0.83 -0.8
722,366 - Atu3671 0.83 -0.2
722,373 + Atu3671 0.83 -1.1
722,381 - Atu3671 0.84 +0.3
722,402 - Atu3671 0.86 -0.5

Or see this region's nucleotide sequence