Strain Fitness in Agrobacterium fabrum C58 around Atu3096

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3094 and Atu3095 are separated by 236 nucleotidesAtu3095 and Atu3096 are separated by 260 nucleotidesAtu3096 and Atu3097 are separated by 82 nucleotidesAtu3097 and Atu3098 are separated by 7 nucleotides Atu3094: Atu3094 - methyl-accepting chemotaxis protein, at 100,201 to 101,985 Atu3094 Atu3095: Atu3095 - hypothetical protein, at 102,222 to 102,695 Atu3095 Atu3096: Atu3096 - sn-glycerol 3-phosphate ABC transporter substrate-binding protein, at 102,956 to 104,299 Atu3096 Atu3097: Atu3097 - sn-glycerol-3-phosphate ABC transporter membrane protein, at 104,382 to 105,272 Atu3097 Atu3098: Atu3098 - sn-glycerol-3-phosphate ABC transporter membrane protein, at 105,280 to 106,164 Atu3098 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 102.097 kb on - strandat 102.251 kb on + strandat 102.405 kb on + strand, within Atu3095at 102.550 kb on + strand, within Atu3095at 102.554 kb on - strand, within Atu3095at 102.600 kb on + strand, within Atu3095at 102.884 kb on + strandat 102.990 kb on + strandat 103.064 kb on - strandat 103.146 kb on - strand, within Atu3096at 103.147 kb on - strand, within Atu3096at 103.174 kb on + strand, within Atu3096at 103.256 kb on - strand, within Atu3096at 103.258 kb on + strand, within Atu3096at 103.258 kb on + strand, within Atu3096at 103.258 kb on + strand, within Atu3096at 103.266 kb on + strand, within Atu3096at 103.266 kb on - strand, within Atu3096at 103.266 kb on - strand, within Atu3096at 103.360 kb on - strand, within Atu3096at 103.365 kb on - strand, within Atu3096at 103.472 kb on + strand, within Atu3096at 103.566 kb on - strand, within Atu3096at 103.566 kb on - strand, within Atu3096at 103.566 kb on - strand, within Atu3096at 103.566 kb on - strand, within Atu3096at 103.594 kb on + strand, within Atu3096at 103.594 kb on + strand, within Atu3096at 103.639 kb on + strand, within Atu3096at 103.699 kb on + strand, within Atu3096at 103.737 kb on + strand, within Atu3096at 103.781 kb on + strand, within Atu3096at 103.783 kb on + strand, within Atu3096at 103.791 kb on - strand, within Atu3096at 103.861 kb on - strand, within Atu3096at 103.905 kb on - strand, within Atu3096at 103.951 kb on - strand, within Atu3096at 104.046 kb on - strand, within Atu3096at 104.073 kb on - strand, within Atu3096at 104.100 kb on + strand, within Atu3096at 104.101 kb on - strand, within Atu3096at 104.158 kb on - strand, within Atu3096at 104.224 kb on + strandat 104.242 kb on + strandat 104.242 kb on + strandat 104.255 kb on - strandat 104.290 kb on + strandat 104.326 kb on - strandat 104.326 kb on - strandat 104.346 kb on - strandat 104.346 kb on - strandat 104.449 kb on + strandat 104.492 kb on - strand, within Atu3097at 104.492 kb on - strand, within Atu3097at 104.642 kb on + strand, within Atu3097at 104.652 kb on + strand, within Atu3097at 104.652 kb on + strand, within Atu3097at 104.713 kb on - strand, within Atu3097at 104.759 kb on - strand, within Atu3097at 104.847 kb on + strand, within Atu3097at 104.852 kb on + strand, within Atu3097at 104.895 kb on + strand, within Atu3097at 104.897 kb on - strand, within Atu3097at 104.963 kb on - strand, within Atu3097at 104.965 kb on + strand, within Atu3097at 104.973 kb on - strand, within Atu3097at 104.992 kb on + strand, within Atu3097at 105.013 kb on + strand, within Atu3097at 105.106 kb on + strand, within Atu3097at 105.186 kb on + strandat 105.194 kb on - strandat 105.219 kb on + strandat 105.295 kb on + strandat 105.295 kb on + strandat 105.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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102,097 - +1.6
102,251 + +1.3
102,405 + Atu3095 0.39 +1.3
102,550 + Atu3095 0.69 +1.1
102,554 - Atu3095 0.70 -0.2
102,600 + Atu3095 0.80 -2.5
102,884 + -1.7
102,990 + -0.2
103,064 - +1.1
103,146 - Atu3096 0.14 +0.2
103,147 - Atu3096 0.14 -0.8
103,174 + Atu3096 0.16 +0.4
103,256 - Atu3096 0.22 -2.5
103,258 + Atu3096 0.22 -0.1
103,258 + Atu3096 0.22 -1.4
103,258 + Atu3096 0.22 +0.6
103,266 + Atu3096 0.23 +0.3
103,266 - Atu3096 0.23 +0.7
103,266 - Atu3096 0.23 +0.6
103,360 - Atu3096 0.30 +0.4
103,365 - Atu3096 0.30 -0.1
103,472 + Atu3096 0.38 +0.6
103,566 - Atu3096 0.45 -1.5
103,566 - Atu3096 0.45 +3.5
103,566 - Atu3096 0.45 +1.0
103,566 - Atu3096 0.45 +0.4
103,594 + Atu3096 0.47 -3.0
103,594 + Atu3096 0.47 -0.5
103,639 + Atu3096 0.51 -1.7
103,699 + Atu3096 0.55 +0.5
103,737 + Atu3096 0.58 +0.9
103,781 + Atu3096 0.61 +2.0
103,783 + Atu3096 0.62 -0.4
103,791 - Atu3096 0.62 +0.0
103,861 - Atu3096 0.67 -0.3
103,905 - Atu3096 0.71 +1.1
103,951 - Atu3096 0.74 -2.0
104,046 - Atu3096 0.81 +1.2
104,073 - Atu3096 0.83 +0.7
104,100 + Atu3096 0.85 -0.4
104,101 - Atu3096 0.85 +0.0
104,158 - Atu3096 0.89 +0.6
104,224 + +0.6
104,242 + +1.3
104,242 + +0.9
104,255 - +1.1
104,290 + +1.3
104,326 - -0.4
104,326 - +0.8
104,346 - -0.7
104,346 - -1.5
104,449 + -0.0
104,492 - Atu3097 0.12 -2.5
104,492 - Atu3097 0.12 +0.3
104,642 + Atu3097 0.29 +0.5
104,652 + Atu3097 0.30 -0.7
104,652 + Atu3097 0.30 +0.3
104,713 - Atu3097 0.37 +1.3
104,759 - Atu3097 0.42 -1.3
104,847 + Atu3097 0.52 +0.7
104,852 + Atu3097 0.53 +1.5
104,895 + Atu3097 0.58 -2.0
104,897 - Atu3097 0.58 +1.0
104,963 - Atu3097 0.65 +1.3
104,965 + Atu3097 0.65 +0.5
104,973 - Atu3097 0.66 +0.8
104,992 + Atu3097 0.68 -1.0
105,013 + Atu3097 0.71 -0.2
105,106 + Atu3097 0.81 +0.5
105,186 + -0.4
105,194 - +0.6
105,219 + +0.6
105,295 + +0.4
105,295 + -0.8
105,295 + -0.2

Or see this region's nucleotide sequence