Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0839 and Atu0840 are separated by 1 nucleotides Atu0840 and Atu0841 are separated by 154 nucleotides
Atu0839: Atu0839 - hypothetical protein, at 838,736 to 839,731
Atu0839
Atu0840: Atu0840 - ATP-dependent DNA ligase, at 839,733 to 841,358
Atu0840
Atu0841: Atu0841 - hypothetical protein, at 841,513 to 842,478
Atu0841
Position (kb) 839
840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 838.827 kb on - strand at 838.843 kb on + strand, within Atu0839 at 838.944 kb on + strand, within Atu0839 at 838.952 kb on - strand, within Atu0839 at 838.956 kb on + strand, within Atu0839 at 838.956 kb on - strand, within Atu0839 at 838.997 kb on + strand, within Atu0839 at 839.000 kb on - strand, within Atu0839 at 839.011 kb on - strand, within Atu0839 at 839.090 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.098 kb on + strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.106 kb on - strand, within Atu0839 at 839.139 kb on + strand, within Atu0839 at 839.192 kb on + strand, within Atu0839 at 839.202 kb on + strand, within Atu0839 at 839.212 kb on - strand, within Atu0839 at 839.238 kb on + strand, within Atu0839 at 839.382 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839 at 839.421 kb on - strand, within Atu0839 at 839.508 kb on + strand, within Atu0839 at 839.557 kb on + strand, within Atu0839 at 839.562 kb on + strand, within Atu0839 at 839.672 kb on - strand at 839.728 kb on - strand at 839.740 kb on - strand at 839.740 kb on - strand at 839.761 kb on + strand at 839.814 kb on - strand at 839.884 kb on + strand at 839.892 kb on - strand at 839.928 kb on + strand, within Atu0840 at 839.929 kb on - strand, within Atu0840 at 839.934 kb on + strand, within Atu0840 at 839.975 kb on - strand, within Atu0840 at 840.034 kb on - strand, within Atu0840 at 840.076 kb on + strand, within Atu0840 at 840.087 kb on - strand, within Atu0840 at 840.128 kb on - strand, within Atu0840 at 840.258 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.269 kb on + strand, within Atu0840 at 840.277 kb on - strand, within Atu0840 at 840.277 kb on - strand, within Atu0840 at 840.404 kb on + strand, within Atu0840 at 840.409 kb on - strand, within Atu0840 at 840.526 kb on - strand, within Atu0840 at 840.690 kb on - strand, within Atu0840 at 840.725 kb on + strand, within Atu0840 at 840.730 kb on + strand, within Atu0840 at 840.880 kb on - strand, within Atu0840 at 840.936 kb on - strand, within Atu0840 at 841.002 kb on - strand, within Atu0840 at 841.059 kb on - strand, within Atu0840 at 841.203 kb on + strand at 841.238 kb on + strand at 841.238 kb on + strand at 841.243 kb on + strand at 841.286 kb on - strand at 841.467 kb on + strand at 841.467 kb on - strand at 841.472 kb on + strand at 841.475 kb on - strand at 841.480 kb on - strand at 841.480 kb on - strand at 841.480 kb on - strand at 841.497 kb on - strand at 841.571 kb on + strand at 841.650 kb on + strand, within Atu0841 at 841.651 kb on - strand, within Atu0841 at 841.672 kb on - strand, within Atu0841 at 841.687 kb on + strand, within Atu0841 at 841.695 kb on - strand, within Atu0841 at 841.716 kb on + strand, within Atu0841 at 841.716 kb on + strand, within Atu0841 at 841.724 kb on - strand, within Atu0841 at 841.847 kb on + strand, within Atu0841 at 841.932 kb on + strand, within Atu0841 at 842.167 kb on + strand, within Atu0841 at 842.167 kb on + strand, within Atu0841 at 842.196 kb on + strand, within Atu0841 at 842.209 kb on - strand, within Atu0841 at 842.237 kb on + strand, within Atu0841 at 842.318 kb on + strand, within Atu0841 at 842.326 kb on - strand, within Atu0841 at 842.326 kb on - strand, within Atu0841 at 842.326 kb on - strand, within Atu0841
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 838,827 - -1.2 838,843 + Atu0839 0.11 +1.9 838,944 + Atu0839 0.21 +0.6 838,952 - Atu0839 0.22 -0.3 838,956 + Atu0839 0.22 -3.5 838,956 - Atu0839 0.22 +1.2 838,997 + Atu0839 0.26 +1.2 839,000 - Atu0839 0.27 -0.5 839,011 - Atu0839 0.28 -0.9 839,090 + Atu0839 0.36 +0.3 839,098 + Atu0839 0.36 -0.1 839,098 + Atu0839 0.36 -2.2 839,106 - Atu0839 0.37 +0.1 839,106 - Atu0839 0.37 +0.0 839,139 + Atu0839 0.40 +0.7 839,192 + Atu0839 0.46 -0.2 839,202 + Atu0839 0.47 +0.5 839,212 - Atu0839 0.48 +0.7 839,238 + Atu0839 0.50 +0.7 839,382 - Atu0839 0.65 -0.2 839,421 - Atu0839 0.69 +0.6 839,421 - Atu0839 0.69 -1.3 839,508 + Atu0839 0.78 -1.7 839,557 + Atu0839 0.82 -0.2 839,562 + Atu0839 0.83 -0.6 839,672 - -0.5 839,728 - +0.5 839,740 - -0.1 839,740 - -0.7 839,761 + -0.5 839,814 - -1.4 839,884 + -0.8 839,892 - +0.7 839,928 + Atu0840 0.12 -0.1 839,929 - Atu0840 0.12 +2.1 839,934 + Atu0840 0.12 +0.1 839,975 - Atu0840 0.15 +1.0 840,034 - Atu0840 0.19 -0.6 840,076 + Atu0840 0.21 +0.8 840,087 - Atu0840 0.22 -0.1 840,128 - Atu0840 0.24 +0.7 840,258 + Atu0840 0.32 -0.1 840,269 + Atu0840 0.33 +0.2 840,269 + Atu0840 0.33 +0.5 840,269 + Atu0840 0.33 -0.9 840,269 + Atu0840 0.33 -0.7 840,269 + Atu0840 0.33 +0.5 840,269 + Atu0840 0.33 +0.2 840,269 + Atu0840 0.33 +1.0 840,269 + Atu0840 0.33 -2.1 840,269 + Atu0840 0.33 -0.3 840,277 - Atu0840 0.33 -0.6 840,277 - Atu0840 0.33 -0.3 840,404 + Atu0840 0.41 -0.1 840,409 - Atu0840 0.42 +0.3 840,526 - Atu0840 0.49 +0.6 840,690 - Atu0840 0.59 -0.5 840,725 + Atu0840 0.61 +0.6 840,730 + Atu0840 0.61 +1.0 840,880 - Atu0840 0.71 -2.2 840,936 - Atu0840 0.74 +1.7 841,002 - Atu0840 0.78 +0.0 841,059 - Atu0840 0.82 +0.4 841,203 + -1.8 841,238 + -0.5 841,238 + +0.9 841,243 + +0.7 841,286 - +1.2 841,467 + +1.4 841,467 - -0.1 841,472 + +0.3 841,475 - +0.7 841,480 - -0.5 841,480 - -0.3 841,480 - +0.5 841,497 - -0.5 841,571 + +0.2 841,650 + Atu0841 0.14 +0.7 841,651 - Atu0841 0.14 +0.6 841,672 - Atu0841 0.16 +0.9 841,687 + Atu0841 0.18 +0.0 841,695 - Atu0841 0.19 +1.5 841,716 + Atu0841 0.21 +1.7 841,716 + Atu0841 0.21 +0.3 841,724 - Atu0841 0.22 +0.2 841,847 + Atu0841 0.35 +0.6 841,932 + Atu0841 0.43 -0.3 842,167 + Atu0841 0.68 +1.2 842,167 + Atu0841 0.68 +1.7 842,196 + Atu0841 0.71 -1.2 842,209 - Atu0841 0.72 +0.2 842,237 + Atu0841 0.75 -0.3 842,318 + Atu0841 0.83 -0.3 842,326 - Atu0841 0.84 -0.6 842,326 - Atu0841 0.84 -0.6 842,326 - Atu0841 0.84 +0.4
Or see this region's nucleotide sequence