Strain Fitness in Agrobacterium fabrum C58 around Atu3977

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
1,087,594	+		Atu3976	0.76	+0.7
1,087,649	-		Atu3976	0.79	-0.3
1,087,651	+		Atu3976	0.79	-1.1
1,087,659	-		Atu3976	0.79	-0.0
1,087,659	-		Atu3976	0.79	+0.2
1,087,659	-		Atu3976	0.79	-0.7
1,087,729	+		Atu3976	0.83	+1.0
1,087,769	-		Atu3976	0.85	+0.2
1,087,818	+		Atu3976	0.87	+1.0
1,087,823	+		Atu3976	0.87	-1.8
1,087,824	+		Atu3976	0.88	-1.0
1,087,831	-		Atu3976	0.88	-0.5
1,087,923	-				-1.0
1,087,944	+				+0.9
1,087,970	+				-0.4
1,087,970	+				-0.4
1,087,978	-				+0.0
1,088,064	-				-0.5
1,088,111	+				+0.1
1,088,720	-				-0.3
1,088,726	-				+1.8
1,088,733	+				+0.7
1,088,736	-				+1.0
1,088,743	+				-0.0
1,088,759	+				-0.6
1,088,767	-				+0.3
1,088,771	+				-1.6
1,088,781	+				-0.9
1,088,783	+				+0.5
1,088,783	+				-0.2
1,088,789	-				+0.7
1,088,791	-				+1.5
1,088,798	-				-1.3
1,088,800	+				+0.2
1,088,800	+				+0.3
1,088,805	+				+0.9
1,088,808	-				-0.5
1,088,813	-				+0.6
1,088,813	-				+0.7
1,088,813	-				+0.0
1,088,819	+				+0.3
1,088,822	-				-0.9
1,088,829	+				-0.5
1,088,832	-				-0.6
1,088,837	-				+1.7
1,088,846	-				-1.8
1,088,922	+		Atu3977	0.12	-1.9
1,088,949	+		Atu3977	0.13	-1.6
1,088,998	-		Atu3977	0.14	-0.0
1,088,998	-		Atu3977	0.14	-0.2
1,089,005	-		Atu3977	0.15	+0.8
1,089,015	-		Atu3977	0.15	-0.3
1,089,041	-		Atu3977	0.16	+1.0
1,089,099	-		Atu3977	0.18	+0.6
1,089,106	-		Atu3977	0.18	-1.9
1,089,117	+		Atu3977	0.18	-0.1
1,089,145	-		Atu3977	0.19	-2.1
1,089,158	+		Atu3977	0.20	+0.3
1,089,158	+		Atu3977	0.20	-0.4
1,089,165	+		Atu3977	0.20	+0.4
1,089,166	-		Atu3977	0.20	-0.1
1,089,182	+		Atu3977	0.21	-0.7
1,089,188	-		Atu3977	0.21	+3.2
1,089,194	+		Atu3977	0.21	+0.2
1,089,237	+		Atu3977	0.22	+0.0
1,089,249	+		Atu3977	0.23	+0.1
1,089,261	+		Atu3977	0.23	+0.4
1,089,315	-		Atu3977	0.25	+0.1
1,089,317	+		Atu3977	0.25	-0.0
1,089,334	+		Atu3977	0.26	-0.0
1,089,356	-		Atu3977	0.26	-1.1
1,089,389	+		Atu3977	0.28	-0.3
1,089,396	+		Atu3977	0.28	+0.5
1,089,396	+		Atu3977	0.28	-0.4
1,089,397	-		Atu3977	0.28	+1.7
1,089,397	-		Atu3977	0.28	+0.1
1,089,397	-		Atu3977	0.28	+1.2
1,089,411	+		Atu3977	0.28	+0.3
1,089,411	+		Atu3977	0.28	-0.8
1,089,419	-		Atu3977	0.29	-2.3
1,089,419	-		Atu3977	0.29	+0.3
1,089,419	-		Atu3977	0.29	+0.3
1,089,432	+		Atu3977	0.29	+0.4
1,089,480	+		Atu3977	0.31	+1.4
1,089,516	+		Atu3977	0.32	+1.3
1,089,524	-		Atu3977	0.32	+0.1
1,089,533	+		Atu3977	0.32	+0.1
1,089,539	-		Atu3977	0.33	+0.2
1,089,582	-		Atu3977	0.34	-1.0
1,089,587	-		Atu3977	0.34	-0.1
1,089,587	-		Atu3977	0.34	+0.6
1,089,612	+		Atu3977	0.35	+0.1
1,089,612	+		Atu3977	0.35	-0.3
1,089,612	+		Atu3977	0.35	+0.4
1,089,612	+		Atu3977	0.35	-0.1
1,089,612	+		Atu3977	0.35	-1.8
1,089,612	+		Atu3977	0.35	+0.1
1,089,620	-		Atu3977	0.35	+1.4
1,089,620	-		Atu3977	0.35	-1.6
1,089,620	-		Atu3977	0.35	+1.3
1,089,620	-		Atu3977	0.35	-0.2
1,089,622	+		Atu3977	0.35	+0.6
1,089,629	+		Atu3977	0.36	+0.1
1,089,636	+		Atu3977	0.36	+0.0
1,089,660	+		Atu3977	0.37	-0.6
1,089,673	-		Atu3977	0.37	+1.2
1,089,715	+		Atu3977	0.39	+0.6
1,089,715	+		Atu3977	0.39	-1.3
1,089,760	-		Atu3977	0.40	+0.7
1,089,786	-		Atu3977	0.41	+0.3
1,089,788	+		Atu3977	0.41	+0.5
1,089,788	+		Atu3977	0.41	+1.0
1,089,788	+		Atu3977	0.41	+0.4
1,089,788	+		Atu3977	0.41	+1.0
1,089,795	+		Atu3977	0.41	+0.1
1,089,795	+		Atu3977	0.41	+0.3
1,089,796	-		Atu3977	0.41	+0.3
1,089,796	-		Atu3977	0.41	-3.3
1,089,803	-		Atu3977	0.42	+0.5
1,089,833	-		Atu3977	0.43	+0.2
1,089,997	+		Atu3977	0.48	+0.5
1,089,997	+		Atu3977	0.48	-2.7
1,090,114	+		Atu3977	0.52	+0.0
1,090,114	+		Atu3977	0.52	-0.7
1,090,151	+		Atu3977	0.53	+1.8
1,090,202	-		Atu3977	0.55	+0.2
1,090,202	-		Atu3977	0.55	+0.2
1,090,206	+		Atu3977	0.55	+1.7
1,090,214	-		Atu3977	0.55	+1.1
1,090,230	+		Atu3977	0.56	-0.8
1,090,237	+		Atu3977	0.56	-1.4
1,090,259	+		Atu3977	0.57	-0.1
1,090,267	-		Atu3977	0.57	+0.6
1,090,276	-		Atu3977	0.57	-2.0
1,090,327	-		Atu3977	0.59	+0.6
1,090,337	-		Atu3977	0.59	-1.1
1,090,410	+		Atu3977	0.62	+1.1
1,090,410	+		Atu3977	0.62	-0.0
1,090,410	+		Atu3977	0.62	+0.4
1,090,418	-		Atu3977	0.62	-0.4
1,090,418	-		Atu3977	0.62	+0.3
1,090,444	+		Atu3977	0.63	+1.6
1,090,444	+		Atu3977	0.63	-0.7
1,090,446	+		Atu3977	0.63	-1.1
1,090,452	-		Atu3977	0.63	+2.1
1,090,452	-		Atu3977	0.63	+0.3
1,090,452	-		Atu3977	0.63	-1.3
1,090,452	-		Atu3977	0.63	+1.6
1,090,452	-		Atu3977	0.63	-0.8
1,090,454	-		Atu3977	0.63	-0.4
1,090,454	-		Atu3977	0.63	+0.2
1,090,472	-		Atu3977	0.64	+0.1
1,090,478	-		Atu3977	0.64	-0.7
1,090,487	+		Atu3977	0.65	-1.9
1,090,497	+		Atu3977	0.65	-0.8
1,090,544	-		Atu3977	0.66	+1.2
1,090,545	+		Atu3977	0.66	-0.0
1,090,566	-		Atu3977	0.67	+1.1
1,090,569	+		Atu3977	0.67	+0.2
1,090,575	-		Atu3977	0.68	-0.1
1,090,584	-		Atu3977	0.68	+0.1
1,090,605	+		Atu3977	0.69	+0.5
1,090,605	+		Atu3977	0.69	+0.9
1,090,605	+		Atu3977	0.69	-0.6
1,090,617	+		Atu3977	0.69	-0.2
1,090,634	+		Atu3977	0.69	+0.1
1,090,637	-		Atu3977	0.70	+0.6
1,090,754	+		Atu3977	0.74	-0.2
1,090,766	+		Atu3977	0.74	-3.4
1,090,778	+		Atu3977	0.74	+0.4
1,090,778	+		Atu3977	0.74	-0.4
1,090,817	-		Atu3977	0.76	-2.1
1,090,841	-		Atu3977	0.76	+1.2
1,090,846	-		Atu3977	0.77	-2.3
1,090,957	-		Atu3977	0.80	+0.6
1,090,969	+		Atu3977	0.81	+0.1
1,090,969	+		Atu3977	0.81	+0.4
1,090,986	-		Atu3977	0.81	+0.1
1,090,992	+		Atu3977	0.82	-0.4
1,090,992	+		Atu3977	0.82	+0.5
1,091,000	-		Atu3977	0.82	+0.8
1,091,000	-		Atu3977	0.82	-0.1
1,091,000	-		Atu3977	0.82	-0.2
1,091,000	-		Atu3977	0.82	-0.1
1,091,010	-		Atu3977	0.82	+0.6
1,091,010	-		Atu3977	0.82	+0.8
1,091,036	-		Atu3977	0.83	+0.3
1,091,065	-		Atu3977	0.84	-1.2
1,091,081	+		Atu3977	0.85	-0.1
1,091,129	+		Atu3977	0.86	+1.2
1,091,158	+		Atu3977	0.87	-0.4
1,091,170	+		Atu3977	0.88	+0.7
1,091,170	+		Atu3977	0.88	-0.6
1,091,175	+		Atu3977	0.88	+0.4
1,091,175	+		Atu3977	0.88	-1.6
1,091,177	+		Atu3977	0.88	-0.2
1,091,183	-		Atu3977	0.88	-0.9
1,091,183	-		Atu3977	0.88	-1.0
1,091,185	-		Atu3977	0.88	+0.1
1,091,185	-		Atu3977	0.88	-1.6
1,091,208	+		Atu3977	0.89	-0.3
1,091,216	-		Atu3977	0.89	+0.6
1,091,216	-		Atu3977	0.89	-0.0
1,091,216	-		Atu3977	0.89	+1.6
1,091,221	-		Atu3977	0.89	+1.6
1,091,232	+		Atu3977	0.90	-0.8
1,091,237	+		Atu3977	0.90	-0.2
1,091,276	-				+1.2
1,091,280	+				-0.6
1,091,280	+				+2.6
1,091,288	-				-0.6
1,091,297	+				+0.0
1,091,322	-				+0.6
1,091,328	-				+0.1
1,091,329	-				-0.8
1,091,367	+				-2.2
1,091,424	+				+0.4
1,091,487	+				+1.0
1,091,494	+				+1.2
1,091,526	-				-0.4
1,091,535	+				+0.1
1,091,567	+				+0.1
1,091,575	-				-0.3
1,092,000	-				-0.5
1,092,035	+				-0.2
1,092,256	+				-0.1
1,092,347	-				+0.7
1,092,391	-		Atu3978	0.11	+0.6
1,092,487	+		Atu3978	0.21	+1.2
1,092,487	+		Atu3978	0.21	+0.3
1,092,487	+		Atu3978	0.21	+0.4
1,092,500	-		Atu3978	0.23	+0.5
1,092,525	-		Atu3978	0.26	+1.1