Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3154 and Atu3155 are separated by 83 nucleotides Atu3155 and Atu3156 are separated by 24 nucleotides
Atu3154: Atu3154 - fosmidomycin resistance protein, at 162,866 to 164,062
Atu3154
Atu3155: Atu3155 - LysR family transcriptional regulator, at 164,146 to 165,042
Atu3155
Atu3156: Atu3156 - ABC transporter permease, at 165,067 to 166,347
Atu3156
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.158 kb on + strand, within Atu3154 at 163.169 kb on + strand, within Atu3154 at 163.197 kb on + strand, within Atu3154 at 163.280 kb on + strand, within Atu3154 at 163.339 kb on + strand, within Atu3154 at 163.371 kb on + strand, within Atu3154 at 163.423 kb on + strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.446 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.549 kb on - strand, within Atu3154 at 163.595 kb on - strand, within Atu3154 at 163.726 kb on - strand, within Atu3154 at 163.794 kb on - strand, within Atu3154 at 163.961 kb on - strand at 164.066 kb on - strand at 164.107 kb on + strand at 164.127 kb on + strand at 164.132 kb on + strand at 164.145 kb on - strand at 164.204 kb on + strand at 164.243 kb on - strand, within Atu3155 at 164.320 kb on - strand, within Atu3155 at 164.348 kb on - strand, within Atu3155 at 164.569 kb on - strand, within Atu3155 at 164.611 kb on + strand, within Atu3155 at 164.746 kb on + strand, within Atu3155 at 164.867 kb on + strand, within Atu3155 at 164.882 kb on + strand, within Atu3155 at 164.962 kb on - strand at 165.037 kb on + strand at 165.058 kb on + strand at 165.219 kb on + strand, within Atu3156 at 165.332 kb on - strand, within Atu3156 at 165.425 kb on - strand, within Atu3156 at 165.480 kb on - strand, within Atu3156 at 165.481 kb on - strand, within Atu3156 at 165.519 kb on - strand, within Atu3156 at 165.608 kb on + strand, within Atu3156 at 165.608 kb on + strand, within Atu3156 at 165.611 kb on - strand, within Atu3156 at 165.616 kb on - strand, within Atu3156 at 165.616 kb on - strand, within Atu3156 at 165.641 kb on + strand, within Atu3156 at 165.676 kb on + strand, within Atu3156 at 165.773 kb on + strand, within Atu3156 at 165.905 kb on + strand, within Atu3156 at 165.918 kb on - strand, within Atu3156 at 165.923 kb on + strand, within Atu3156 at 166.024 kb on + strand, within Atu3156 at 166.032 kb on + strand, within Atu3156
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 163,158 + Atu3154 0.24 -0.2 163,169 + Atu3154 0.25 +1.1 163,197 + Atu3154 0.28 -0.5 163,280 + Atu3154 0.35 -0.2 163,339 + Atu3154 0.40 -0.0 163,371 + Atu3154 0.42 +1.8 163,423 + Atu3154 0.47 -1.5 163,431 - Atu3154 0.47 -3.2 163,431 - Atu3154 0.47 +1.7 163,446 + Atu3154 0.48 -1.0 163,514 + Atu3154 0.54 -0.4 163,514 + Atu3154 0.54 -0.4 163,514 + Atu3154 0.54 -0.6 163,549 - Atu3154 0.57 -0.6 163,595 - Atu3154 0.61 +0.3 163,726 - Atu3154 0.72 +0.6 163,794 - Atu3154 0.78 -0.4 163,961 - -0.3 164,066 - +0.4 164,107 + +0.1 164,127 + +0.9 164,132 + +0.2 164,145 - +1.0 164,204 + +0.2 164,243 - Atu3155 0.11 -0.1 164,320 - Atu3155 0.19 +0.2 164,348 - Atu3155 0.23 +1.2 164,569 - Atu3155 0.47 +0.5 164,611 + Atu3155 0.52 -0.7 164,746 + Atu3155 0.67 -1.6 164,867 + Atu3155 0.80 +1.9 164,882 + Atu3155 0.82 -0.0 164,962 - +0.8 165,037 + +0.6 165,058 + +1.1 165,219 + Atu3156 0.12 -1.7 165,332 - Atu3156 0.21 -0.5 165,425 - Atu3156 0.28 -0.3 165,480 - Atu3156 0.32 -0.5 165,481 - Atu3156 0.32 +0.2 165,519 - Atu3156 0.35 +0.7 165,608 + Atu3156 0.42 -0.5 165,608 + Atu3156 0.42 -1.5 165,611 - Atu3156 0.42 +1.1 165,616 - Atu3156 0.43 -0.1 165,616 - Atu3156 0.43 +0.3 165,641 + Atu3156 0.45 +0.7 165,676 + Atu3156 0.48 +1.1 165,773 + Atu3156 0.55 -0.7 165,905 + Atu3156 0.65 +0.8 165,918 - Atu3156 0.66 -1.4 165,923 + Atu3156 0.67 -0.5 166,024 + Atu3156 0.75 -2.4 166,032 + Atu3156 0.75 -0.0
Or see this region's nucleotide sequence