Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0480 and Atu0481 are separated by 377 nucleotides Atu0481 and Atu0482 are separated by 26 nucleotides Atu0482 and Atu0483 are separated by 61 nucleotides
Atu0480: Atu0480 - polysaccharide biosynthesis protein, at 468,531 to 469,733
Atu0480
Atu0481: Atu0481 - exopolysaccharide production protein, at 470,111 to 471,406
Atu0481
Atu0482: Atu0482 - polysaccharide deacetylase, at 471,433 to 472,185
Atu0482
Atu0483: Atu0483 - bacteriophage repressor protein C1, at 472,247 to 472,897
Atu0483
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.116 kb on - strand, within Atu0480 at 469.239 kb on + strand, within Atu0480 at 469.249 kb on + strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.262 kb on - strand, within Atu0480 at 469.393 kb on + strand, within Atu0480 at 469.401 kb on - strand, within Atu0480 at 469.421 kb on + strand, within Atu0480 at 469.535 kb on - strand, within Atu0480 at 469.535 kb on - strand, within Atu0480 at 469.540 kb on - strand, within Atu0480 at 469.562 kb on + strand, within Atu0480 at 469.615 kb on + strand at 469.715 kb on - strand at 469.798 kb on + strand at 469.886 kb on + strand at 469.958 kb on - strand at 469.975 kb on + strand at 470.012 kb on + strand at 470.067 kb on + strand at 470.070 kb on - strand at 470.101 kb on - strand at 470.130 kb on - strand at 470.134 kb on + strand at 470.134 kb on + strand at 470.144 kb on + strand at 470.149 kb on + strand at 470.316 kb on - strand, within Atu0481 at 470.337 kb on - strand, within Atu0481 at 470.349 kb on - strand, within Atu0481 at 470.406 kb on + strand, within Atu0481 at 470.467 kb on - strand, within Atu0481 at 470.562 kb on + strand, within Atu0481 at 470.592 kb on + strand, within Atu0481 at 470.597 kb on + strand, within Atu0481 at 470.612 kb on - strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.729 kb on + strand, within Atu0481 at 470.737 kb on - strand, within Atu0481 at 470.825 kb on - strand, within Atu0481 at 470.827 kb on + strand, within Atu0481 at 470.830 kb on - strand, within Atu0481 at 470.835 kb on - strand, within Atu0481 at 470.844 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.888 kb on + strand, within Atu0481 at 471.001 kb on - strand, within Atu0481 at 471.017 kb on - strand, within Atu0481 at 471.229 kb on - strand, within Atu0481 at 471.253 kb on - strand, within Atu0481 at 471.401 kb on - strand at 471.407 kb on + strand at 471.417 kb on + strand at 471.623 kb on - strand, within Atu0482 at 471.704 kb on + strand, within Atu0482 at 471.725 kb on + strand, within Atu0482 at 471.750 kb on - strand, within Atu0482 at 471.750 kb on - strand, within Atu0482 at 471.933 kb on - strand, within Atu0482 at 471.943 kb on - strand, within Atu0482 at 471.943 kb on - strand, within Atu0482 at 471.961 kb on + strand, within Atu0482 at 471.969 kb on - strand, within Atu0482 at 472.052 kb on + strand, within Atu0482 at 472.143 kb on + strand at 472.254 kb on - strand at 472.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 469,116 - Atu0480 0.49 -1.7 469,239 + Atu0480 0.59 -0.8 469,249 + Atu0480 0.60 -0.3 469,257 - Atu0480 0.60 +0.0 469,257 - Atu0480 0.60 -1.0 469,257 - Atu0480 0.60 +0.1 469,262 - Atu0480 0.61 -1.2 469,393 + Atu0480 0.72 -1.0 469,401 - Atu0480 0.72 -1.0 469,421 + Atu0480 0.74 -1.5 469,535 - Atu0480 0.83 -0.5 469,535 - Atu0480 0.83 -0.9 469,540 - Atu0480 0.84 -2.2 469,562 + Atu0480 0.86 -2.7 469,615 + -0.9 469,715 - -0.5 469,798 + +0.4 469,886 + -0.5 469,958 - -0.2 469,975 + -0.2 470,012 + -0.4 470,067 + -0.9 470,070 - -0.3 470,101 - -0.7 470,130 - -0.1 470,134 + -0.0 470,134 + -0.2 470,144 + -0.1 470,149 + +0.2 470,316 - Atu0481 0.16 -0.6 470,337 - Atu0481 0.17 -0.4 470,349 - Atu0481 0.18 -1.0 470,406 + Atu0481 0.23 -0.6 470,467 - Atu0481 0.27 -0.6 470,562 + Atu0481 0.35 -0.1 470,592 + Atu0481 0.37 -0.2 470,597 + Atu0481 0.38 -0.7 470,612 - Atu0481 0.39 +0.7 470,703 + Atu0481 0.46 -0.7 470,703 + Atu0481 0.46 -0.2 470,711 - Atu0481 0.46 -0.9 470,711 - Atu0481 0.46 -0.5 470,729 + Atu0481 0.48 -0.8 470,737 - Atu0481 0.48 -0.7 470,825 - Atu0481 0.55 -0.6 470,827 + Atu0481 0.55 -0.5 470,830 - Atu0481 0.55 -0.1 470,835 - Atu0481 0.56 -1.5 470,844 + Atu0481 0.57 -0.5 470,879 + Atu0481 0.59 -0.5 470,879 + Atu0481 0.59 -2.1 470,879 + Atu0481 0.59 -1.9 470,879 + Atu0481 0.59 -0.6 470,888 + Atu0481 0.60 -0.6 471,001 - Atu0481 0.69 -0.5 471,017 - Atu0481 0.70 -0.3 471,229 - Atu0481 0.86 -0.3 471,253 - Atu0481 0.88 -1.0 471,401 - -0.3 471,407 + -0.0 471,417 + -1.1 471,623 - Atu0482 0.25 -0.9 471,704 + Atu0482 0.36 -1.4 471,725 + Atu0482 0.39 -1.9 471,750 - Atu0482 0.42 -0.9 471,750 - Atu0482 0.42 -0.5 471,933 - Atu0482 0.66 -1.2 471,943 - Atu0482 0.68 -1.1 471,943 - Atu0482 0.68 -0.9 471,961 + Atu0482 0.70 -1.0 471,969 - Atu0482 0.71 -1.6 472,052 + Atu0482 0.82 -1.2 472,143 + -1.2 472,254 - -0.7 472,254 - -0.1
Or see this region's nucleotide sequence