Experiment: LB_Ntabacum_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3774 and Atu3775 are separated by 59 nucleotides Atu3775 and Atu3776 are separated by 38 nucleotides Atu3776 and Atu3777 are separated by 6 nucleotides
Atu3774: Atu3774 - capsule expression protein, at 857,431 to 858,426
Atu3774
Atu3775: Atu3775 - hypothetical protein, at 858,486 to 858,851
Atu3775
Atu3776: Atu3776 - hypothetical protein, at 858,890 to 859,264
Atu3776
Atu3777: Atu3777 - hypothetical protein, at 859,271 to 860,764
Atu3777
Position (kb) 858
859 Strain fitness (log2 ratio) -1
0
1 at 858.523 kb on + strand, within Atu3775 at 858.531 kb on - strand, within Atu3775 at 858.662 kb on - strand, within Atu3775 at 859.016 kb on + strand, within Atu3776 at 859.077 kb on + strand, within Atu3776 at 859.078 kb on - strand, within Atu3776 at 859.078 kb on - strand, within Atu3776 at 859.112 kb on - strand, within Atu3776 at 859.373 kb on - strand at 859.400 kb on - strand at 859.465 kb on + strand, within Atu3777 at 859.468 kb on + strand, within Atu3777 at 859.476 kb on - strand, within Atu3777 at 859.478 kb on + strand, within Atu3777 at 859.500 kb on + strand, within Atu3777 at 859.525 kb on - strand, within Atu3777 at 859.651 kb on + strand, within Atu3777 at 859.774 kb on - strand, within Atu3777
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Ntabacum_leaf remove 858,523 + Atu3775 0.10 -0.5 858,531 - Atu3775 0.12 -0.7 858,662 - Atu3775 0.48 -0.0 859,016 + Atu3776 0.34 -0.3 859,077 + Atu3776 0.50 +0.1 859,078 - Atu3776 0.50 +0.3 859,078 - Atu3776 0.50 +0.1 859,112 - Atu3776 0.59 -0.5 859,373 - -0.2 859,400 - -0.4 859,465 + Atu3777 0.13 -0.4 859,468 + Atu3777 0.13 -0.1 859,476 - Atu3777 0.14 -0.1 859,478 + Atu3777 0.14 +0.2 859,500 + Atu3777 0.15 -0.5 859,525 - Atu3777 0.17 +0.1 859,651 + Atu3777 0.25 -0.8 859,774 - Atu3777 0.34 -0.9
Or see this region's nucleotide sequence