Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6097 and Atu6098 overlap by 4 nucleotides Atu6098 and Atu6099 are separated by 380 nucleotides Atu6099 and Atu6100 are separated by 11 nucleotides Atu6100 and Atu6101 are separated by 128 nucleotides
Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474
Atu6097
Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932
Atu6098
Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915
Atu6099
Atu6100: Atu6100 - conserved hypothetical protein, at 119,927 to 120,328
Atu6100
Atu6101: Atu6101 - helicase, SNF2 family, at 120,457 to 125,538
Atu6101
Position (kb) 119
120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 118.331 kb on + strand, within Atu6097 at 118.400 kb on + strand, within Atu6097 at 118.411 kb on + strand, within Atu6097 at 118.423 kb on + strand at 118.423 kb on + strand at 118.423 kb on + strand at 118.428 kb on + strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.436 kb on - strand at 118.438 kb on + strand at 118.446 kb on - strand at 118.446 kb on - strand at 118.513 kb on + strand at 118.513 kb on + strand at 118.858 kb on - strand, within Atu6098 at 118.947 kb on - strand at 119.092 kb on + strand at 119.167 kb on + strand at 119.167 kb on + strand at 119.175 kb on - strand at 119.191 kb on + strand at 119.248 kb on - strand at 119.295 kb on + strand at 119.397 kb on + strand, within Atu6099 at 119.397 kb on + strand, within Atu6099 at 119.405 kb on - strand, within Atu6099 at 119.455 kb on - strand, within Atu6099 at 119.642 kb on + strand, within Atu6099 at 119.706 kb on - strand, within Atu6099 at 119.722 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.798 kb on + strand, within Atu6099 at 119.801 kb on - strand, within Atu6099 at 119.806 kb on - strand, within Atu6099 at 119.806 kb on - strand, within Atu6099 at 119.811 kb on + strand, within Atu6099 at 119.819 kb on - strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.871 kb on - strand at 119.968 kb on - strand, within Atu6100 at 119.978 kb on - strand, within Atu6100 at 119.985 kb on - strand, within Atu6100 at 119.985 kb on - strand, within Atu6100 at 120.085 kb on - strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.113 kb on - strand, within Atu6100 at 120.113 kb on - strand, within Atu6100 at 120.140 kb on - strand, within Atu6100 at 120.162 kb on - strand, within Atu6100 at 120.162 kb on - strand, within Atu6100 at 120.254 kb on + strand, within Atu6100 at 120.262 kb on - strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.277 kb on - strand, within Atu6100 at 120.277 kb on - strand, within Atu6100 at 120.323 kb on + strand at 120.376 kb on + strand at 120.384 kb on - strand at 120.492 kb on + strand at 120.529 kb on - strand at 120.654 kb on - strand at 120.759 kb on - strand at 120.792 kb on - strand at 120.803 kb on + strand at 120.811 kb on - strand at 120.840 kb on - strand at 120.867 kb on + strand at 120.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 118,331 + Atu6097 0.76 -0.4 118,400 + Atu6097 0.87 +1.6 118,411 + Atu6097 0.89 -0.2 118,423 + +0.9 118,423 + +0.8 118,423 + +0.4 118,428 + -0.1 118,431 - -0.2 118,431 - -0.9 118,431 - -0.8 118,431 - -0.2 118,436 - -0.1 118,438 + -0.0 118,446 - +0.3 118,446 - +0.3 118,513 + -0.5 118,513 + -1.0 118,858 - Atu6098 0.84 -3.9 118,947 - +1.1 119,092 + -0.3 119,167 + +0.1 119,167 + -0.2 119,175 - -0.7 119,191 + -0.4 119,248 - +0.3 119,295 + +0.4 119,397 + Atu6099 0.14 +0.8 119,397 + Atu6099 0.14 -0.4 119,405 - Atu6099 0.15 -0.4 119,455 - Atu6099 0.24 -0.7 119,642 + Atu6099 0.55 -0.1 119,706 - Atu6099 0.65 +0.8 119,722 - Atu6099 0.68 -1.0 119,736 - Atu6099 0.70 +0.1 119,736 - Atu6099 0.70 +0.4 119,736 - Atu6099 0.70 +0.6 119,798 + Atu6099 0.80 +0.1 119,801 - Atu6099 0.81 -0.0 119,806 - Atu6099 0.82 -0.5 119,806 - Atu6099 0.82 +0.3 119,811 + Atu6099 0.83 +0.4 119,819 - Atu6099 0.84 -0.3 119,824 + Atu6099 0.85 +0.0 119,824 + Atu6099 0.85 +0.5 119,824 + Atu6099 0.85 +0.2 119,824 + Atu6099 0.85 +0.1 119,824 + Atu6099 0.85 +0.1 119,832 - Atu6099 0.86 -1.1 119,832 - Atu6099 0.86 +0.9 119,832 - Atu6099 0.86 -0.0 119,871 - +0.5 119,968 - Atu6100 0.10 -1.6 119,978 - Atu6100 0.13 +0.2 119,985 - Atu6100 0.14 +0.1 119,985 - Atu6100 0.14 +1.1 120,085 - Atu6100 0.39 +0.0 120,105 + Atu6100 0.44 -0.2 120,105 + Atu6100 0.44 -0.3 120,105 + Atu6100 0.44 -0.1 120,113 - Atu6100 0.46 +0.5 120,113 - Atu6100 0.46 -0.8 120,140 - Atu6100 0.53 +0.4 120,162 - Atu6100 0.58 +0.9 120,162 - Atu6100 0.58 +1.3 120,254 + Atu6100 0.81 +2.0 120,262 - Atu6100 0.83 +0.3 120,269 + Atu6100 0.85 -0.1 120,269 + Atu6100 0.85 +0.2 120,269 + Atu6100 0.85 +0.0 120,277 - Atu6100 0.87 +0.0 120,277 - Atu6100 0.87 +0.2 120,323 + -0.4 120,376 + -0.2 120,384 - -0.2 120,492 + +0.5 120,529 - +0.2 120,654 - +0.7 120,759 - +0.0 120,792 - -0.1 120,803 + +0.3 120,811 - +0.1 120,840 - +0.4 120,867 + +0.3 120,914 - -0.7
Or see this region's nucleotide sequence