Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6096 and Atu6097 overlap by 40 nucleotides Atu6097 and Atu6098 overlap by 4 nucleotides Atu6098 and Atu6099 are separated by 380 nucleotides
Atu6096: Atu6096 - conserved hypothetical protein, at 116,838 to 117,917
Atu6096
Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474
Atu6097
Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932
Atu6098
Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915
Atu6099
Position (kb) 117
118
119 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.926 kb on - strand at 116.926 kb on - strand at 117.014 kb on - strand, within Atu6096 at 117.018 kb on + strand, within Atu6096 at 117.020 kb on + strand, within Atu6096 at 117.037 kb on + strand, within Atu6096 at 117.050 kb on + strand, within Atu6096 at 117.053 kb on - strand, within Atu6096 at 117.060 kb on + strand, within Atu6096 at 117.073 kb on + strand, within Atu6096 at 117.144 kb on + strand, within Atu6096 at 117.232 kb on + strand, within Atu6096 at 117.425 kb on + strand, within Atu6096 at 117.487 kb on - strand, within Atu6096 at 117.505 kb on + strand, within Atu6096 at 117.510 kb on + strand, within Atu6096 at 117.513 kb on - strand, within Atu6096 at 117.520 kb on + strand, within Atu6096 at 117.794 kb on + strand, within Atu6096 at 117.794 kb on + strand, within Atu6096 at 117.869 kb on + strand at 117.869 kb on + strand at 117.874 kb on + strand at 117.877 kb on - strand at 117.877 kb on - strand at 117.911 kb on + strand at 117.937 kb on - strand at 117.956 kb on + strand, within Atu6097 at 117.979 kb on - strand, within Atu6097 at 118.000 kb on - strand, within Atu6097 at 118.039 kb on + strand, within Atu6097 at 118.127 kb on + strand, within Atu6097 at 118.127 kb on + strand, within Atu6097 at 118.128 kb on + strand, within Atu6097 at 118.135 kb on - strand, within Atu6097 at 118.135 kb on - strand, within Atu6097 at 118.214 kb on - strand, within Atu6097 at 118.250 kb on - strand, within Atu6097 at 118.294 kb on - strand, within Atu6097 at 118.297 kb on + strand, within Atu6097 at 118.331 kb on + strand, within Atu6097 at 118.400 kb on + strand, within Atu6097 at 118.411 kb on + strand, within Atu6097 at 118.423 kb on + strand at 118.423 kb on + strand at 118.423 kb on + strand at 118.428 kb on + strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.436 kb on - strand at 118.438 kb on + strand at 118.446 kb on - strand at 118.446 kb on - strand at 118.513 kb on + strand at 118.513 kb on + strand at 118.858 kb on - strand, within Atu6098 at 118.947 kb on - strand at 119.092 kb on + strand at 119.167 kb on + strand at 119.167 kb on + strand at 119.175 kb on - strand at 119.191 kb on + strand at 119.248 kb on - strand at 119.295 kb on + strand at 119.397 kb on + strand, within Atu6099 at 119.397 kb on + strand, within Atu6099 at 119.405 kb on - strand, within Atu6099 at 119.455 kb on - strand, within Atu6099
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 116,918 + +0.1 116,918 + -0.5 116,918 + +0.4 116,918 + -0.2 116,918 + -0.9 116,918 + +0.4 116,926 - -0.3 116,926 - +0.1 117,014 - Atu6096 0.16 +0.1 117,018 + Atu6096 0.17 +0.4 117,020 + Atu6096 0.17 +0.1 117,037 + Atu6096 0.18 -1.4 117,050 + Atu6096 0.20 +0.2 117,053 - Atu6096 0.20 -0.3 117,060 + Atu6096 0.21 +0.3 117,073 + Atu6096 0.22 -0.4 117,144 + Atu6096 0.28 -0.2 117,232 + Atu6096 0.36 +1.3 117,425 + Atu6096 0.54 -1.2 117,487 - Atu6096 0.60 +0.6 117,505 + Atu6096 0.62 -0.2 117,510 + Atu6096 0.62 -0.2 117,513 - Atu6096 0.62 -0.2 117,520 + Atu6096 0.63 +0.2 117,794 + Atu6096 0.89 +0.0 117,794 + Atu6096 0.89 -1.0 117,869 + -0.8 117,869 + -0.4 117,874 + +0.2 117,877 - -0.6 117,877 - -0.9 117,911 + +0.3 117,937 - -0.1 117,956 + Atu6097 0.13 -0.0 117,979 - Atu6097 0.17 -0.1 118,000 - Atu6097 0.20 +0.4 118,039 + Atu6097 0.27 +0.1 118,127 + Atu6097 0.42 -0.6 118,127 + Atu6097 0.42 +0.7 118,128 + Atu6097 0.42 +0.1 118,135 - Atu6097 0.43 +0.2 118,135 - Atu6097 0.43 +2.0 118,214 - Atu6097 0.56 +0.2 118,250 - Atu6097 0.62 -0.4 118,294 - Atu6097 0.70 -0.1 118,297 + Atu6097 0.70 +0.7 118,331 + Atu6097 0.76 -0.4 118,400 + Atu6097 0.87 +1.6 118,411 + Atu6097 0.89 -0.2 118,423 + +0.9 118,423 + +0.8 118,423 + +0.4 118,428 + -0.1 118,431 - -0.2 118,431 - -0.9 118,431 - -0.8 118,431 - -0.2 118,436 - -0.1 118,438 + -0.0 118,446 - +0.3 118,446 - +0.3 118,513 + -0.5 118,513 + -1.0 118,858 - Atu6098 0.84 -3.9 118,947 - +1.1 119,092 + -0.3 119,167 + +0.1 119,167 + -0.2 119,175 - -0.7 119,191 + -0.4 119,248 - +0.3 119,295 + +0.4 119,397 + Atu6099 0.14 +0.8 119,397 + Atu6099 0.14 -0.4 119,405 - Atu6099 0.15 -0.4 119,455 - Atu6099 0.24 -0.7
Or see this region's nucleotide sequence