Strain Fitness in Agrobacterium fabrum C58 around Atu5201

Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5200 and Atu5201 are separated by 272 nucleotidesAtu5201 and Atu5202 are separated by 261 nucleotides Atu5200: Atu5200 - efflux protein, at 196,699 to 198,057 Atu5200 Atu5201: Atu5201 - pirin, at 198,330 to 199,184 Atu5201 Atu5202: Atu5202 - alcohol dehydrogenase, at 199,446 to 200,564 Atu5202 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 197.380 kb on + strand, within Atu5200at 197.429 kb on - strand, within Atu5200at 197.436 kb on - strand, within Atu5200at 197.655 kb on - strand, within Atu5200at 197.669 kb on - strand, within Atu5200at 197.680 kb on - strand, within Atu5200at 197.765 kb on + strand, within Atu5200at 197.784 kb on + strand, within Atu5200at 197.792 kb on - strand, within Atu5200at 197.792 kb on - strand, within Atu5200at 197.893 kb on + strand, within Atu5200at 197.954 kb on + strandat 197.988 kb on - strandat 197.997 kb on + strandat 198.015 kb on + strandat 198.087 kb on - strandat 198.216 kb on + strandat 198.223 kb on + strandat 198.239 kb on - strandat 198.277 kb on + strandat 198.285 kb on - strandat 198.285 kb on - strandat 198.296 kb on + strandat 198.304 kb on - strandat 198.345 kb on + strandat 198.369 kb on + strandat 198.486 kb on + strand, within Atu5201at 198.500 kb on + strand, within Atu5201at 198.507 kb on - strand, within Atu5201at 198.514 kb on - strand, within Atu5201at 198.518 kb on + strand, within Atu5201at 198.526 kb on + strand, within Atu5201at 198.534 kb on - strand, within Atu5201at 198.534 kb on - strand, within Atu5201at 198.534 kb on - strand, within Atu5201at 198.570 kb on + strand, within Atu5201at 198.583 kb on - strand, within Atu5201at 198.648 kb on + strand, within Atu5201at 198.667 kb on - strand, within Atu5201at 198.680 kb on + strand, within Atu5201at 198.684 kb on + strand, within Atu5201at 198.702 kb on + strand, within Atu5201at 198.746 kb on - strand, within Atu5201at 198.873 kb on + strand, within Atu5201at 198.881 kb on - strand, within Atu5201at 198.928 kb on - strand, within Atu5201at 198.944 kb on + strand, within Atu5201at 198.966 kb on + strand, within Atu5201at 199.000 kb on + strand, within Atu5201at 199.000 kb on - strand, within Atu5201at 199.022 kb on + strand, within Atu5201at 199.030 kb on - strand, within Atu5201at 199.168 kb on - strandat 199.190 kb on + strandat 199.228 kb on + strandat 199.254 kb on + strandat 199.262 kb on - strandat 199.262 kb on - strandat 199.262 kb on - strandat 199.262 kb on - strandat 199.262 kb on - strandat 199.280 kb on - strandat 199.299 kb on - strandat 199.356 kb on + strandat 199.369 kb on - strandat 199.369 kb on - strandat 199.402 kb on + strandat 199.475 kb on - strandat 199.500 kb on - strandat 199.513 kb on + strandat 199.599 kb on - strand, within Atu5202at 199.715 kb on + strand, within Atu5202at 199.717 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.824 kb on - strand, within Atu5202at 199.824 kb on - strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.873 kb on - strand, within Atu5202at 199.893 kb on + strand, within Atu5202at 199.901 kb on - strand, within Atu5202at 199.901 kb on - strand, within Atu5202at 199.914 kb on - strand, within Atu5202at 199.940 kb on + strand, within Atu5202at 199.954 kb on + strand, within Atu5202at 199.991 kb on - strand, within Atu5202at 199.991 kb on - strand, within Atu5202at 200.001 kb on - strand, within Atu5202at 200.120 kb on + strand, within Atu5202at 200.128 kb on - strand, within Atu5202at 200.128 kb on - strand, within Atu5202at 200.131 kb on + strand, within Atu5202at 200.153 kb on - strand, within Atu5202at 200.159 kb on - strand, within Atu5202at 200.163 kb on - strand, within Atu5202at 200.163 kb on - strand, within Atu5202

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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197,380 + Atu5200 0.50 -0.1
197,429 - Atu5200 0.54 -0.9
197,436 - Atu5200 0.54 +0.5
197,655 - Atu5200 0.70 +0.0
197,669 - Atu5200 0.71 -0.2
197,680 - Atu5200 0.72 -0.3
197,765 + Atu5200 0.78 +0.2
197,784 + Atu5200 0.80 +0.1
197,792 - Atu5200 0.80 -0.0
197,792 - Atu5200 0.80 +0.4
197,893 + Atu5200 0.88 +0.2
197,954 + -0.6
197,988 - -0.0
197,997 + +0.3
198,015 + -0.2
198,087 - +2.0
198,216 + +0.1
198,223 + -0.2
198,239 - +0.0
198,277 + -0.2
198,285 - +0.1
198,285 - -0.7
198,296 + +0.7
198,304 - +0.7
198,345 + +0.1
198,369 + -0.9
198,486 + Atu5201 0.18 +0.5
198,500 + Atu5201 0.20 -1.1
198,507 - Atu5201 0.21 -0.1
198,514 - Atu5201 0.22 -0.3
198,518 + Atu5201 0.22 -0.6
198,526 + Atu5201 0.23 +0.5
198,534 - Atu5201 0.24 -0.1
198,534 - Atu5201 0.24 +0.0
198,534 - Atu5201 0.24 -0.2
198,570 + Atu5201 0.28 +1.4
198,583 - Atu5201 0.30 +0.0
198,648 + Atu5201 0.37 +0.4
198,667 - Atu5201 0.39 +0.0
198,680 + Atu5201 0.41 -0.1
198,684 + Atu5201 0.41 -0.2
198,702 + Atu5201 0.44 -0.2
198,746 - Atu5201 0.49 +1.0
198,873 + Atu5201 0.64 +1.7
198,881 - Atu5201 0.64 -0.1
198,928 - Atu5201 0.70 -0.0
198,944 + Atu5201 0.72 -0.5
198,966 + Atu5201 0.74 +0.0
199,000 + Atu5201 0.78 -0.3
199,000 - Atu5201 0.78 -0.0
199,022 + Atu5201 0.81 +0.6
199,030 - Atu5201 0.82 +0.4
199,168 - +0.6
199,190 + -0.6
199,228 + -0.0
199,254 + -0.5
199,262 - +0.3
199,262 - -1.2
199,262 - -0.4
199,262 - -0.1
199,262 - -0.6
199,280 - -0.2
199,299 - -0.3
199,356 + -0.5
199,369 - -0.0
199,369 - +0.4
199,402 + +0.2
199,475 - +0.1
199,500 - +0.3
199,513 + -0.0
199,599 - Atu5202 0.14 -2.1
199,715 + Atu5202 0.24 -0.0
199,717 + Atu5202 0.24 +0.1
199,816 + Atu5202 0.33 -1.2
199,816 + Atu5202 0.33 +0.2
199,816 + Atu5202 0.33 +0.5
199,824 - Atu5202 0.34 +0.2
199,824 - Atu5202 0.34 -0.1
199,855 + Atu5202 0.37 -0.0
199,855 + Atu5202 0.37 -1.5
199,855 + Atu5202 0.37 -0.5
199,855 + Atu5202 0.37 -1.4
199,873 - Atu5202 0.38 -0.1
199,893 + Atu5202 0.40 +0.1
199,901 - Atu5202 0.41 -0.9
199,901 - Atu5202 0.41 -0.4
199,914 - Atu5202 0.42 +0.7
199,940 + Atu5202 0.44 -2.0
199,954 + Atu5202 0.45 -0.1
199,991 - Atu5202 0.49 +0.9
199,991 - Atu5202 0.49 +0.4
200,001 - Atu5202 0.50 +0.6
200,120 + Atu5202 0.60 -0.0
200,128 - Atu5202 0.61 +0.1
200,128 - Atu5202 0.61 +0.1
200,131 + Atu5202 0.61 -0.6
200,153 - Atu5202 0.63 +0.2
200,159 - Atu5202 0.64 -0.0
200,163 - Atu5202 0.64 -0.6
200,163 - Atu5202 0.64 -0.1

Or see this region's nucleotide sequence