Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6178 and Atu6179 are separated by 141 nucleotides Atu6179 and Atu6180 are separated by 2 nucleotides Atu6180 and Atu6181 are separated by 270 nucleotides Atu6181 and Atu6182 are separated by 33 nucleotides
Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307
Atu6178
Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057
Atu6179
Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755
Atu6180
Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469
Atu6181
Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846
Atu6182
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 194.060 kb on + strand, within Atu6178 at 194.061 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.129 kb on + strand, within Atu6178 at 194.146 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.157 kb on - strand, within Atu6178 at 194.165 kb on + strand, within Atu6178 at 194.173 kb on - strand, within Atu6178 at 194.216 kb on - strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.237 kb on - strand at 194.246 kb on + strand at 194.269 kb on + strand at 194.302 kb on + strand at 194.317 kb on + strand at 194.385 kb on + strand at 194.385 kb on + strand at 194.404 kb on + strand at 194.409 kb on + strand at 194.412 kb on - strand at 194.431 kb on + strand at 194.437 kb on + strand at 194.439 kb on - strand at 194.453 kb on - strand at 194.568 kb on + strand, within Atu6179 at 194.647 kb on - strand, within Atu6179 at 194.669 kb on + strand, within Atu6179 at 194.702 kb on - strand, within Atu6179 at 194.728 kb on + strand, within Atu6179 at 194.804 kb on - strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.876 kb on - strand, within Atu6179 at 194.896 kb on + strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 195.040 kb on - strand at 195.059 kb on - strand at 195.066 kb on + strand at 195.066 kb on + strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.104 kb on - strand at 195.165 kb on - strand, within Atu6180 at 195.237 kb on - strand, within Atu6180 at 195.239 kb on + strand, within Atu6180 at 195.245 kb on - strand, within Atu6180 at 195.272 kb on - strand, within Atu6180 at 195.318 kb on - strand, within Atu6180 at 195.326 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.418 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.442 kb on - strand, within Atu6180 at 195.452 kb on - strand, within Atu6180 at 195.476 kb on - strand, within Atu6180 at 195.523 kb on - strand, within Atu6180 at 195.525 kb on + strand, within Atu6180 at 195.533 kb on - strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.536 kb on + strand, within Atu6180 at 195.569 kb on - strand, within Atu6180 at 195.589 kb on + strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.633 kb on + strand, within Atu6180 at 195.700 kb on - strand at 195.993 kb on + strand at 196.036 kb on + strand at 196.037 kb on - strand at 196.044 kb on - strand at 196.048 kb on + strand at 196.071 kb on - strand, within Atu6181 at 196.104 kb on - strand, within Atu6181 at 196.178 kb on + strand, within Atu6181 at 196.185 kb on + strand, within Atu6181 at 196.192 kb on + strand, within Atu6181 at 196.210 kb on + strand, within Atu6181 at 196.266 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.312 kb on - strand, within Atu6181 at 196.386 kb on + strand, within Atu6181 at 196.396 kb on - strand, within Atu6181 at 196.459 kb on - strand at 196.459 kb on - strand at 196.459 kb on - strand at 196.480 kb on + strand at 196.566 kb on - strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.614 kb on - strand at 196.614 kb on - strand at 196.692 kb on - strand, within Atu6182 at 196.694 kb on - strand, within Atu6182 at 196.740 kb on - strand, within Atu6182 at 196.747 kb on - strand, within Atu6182
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 194,060 + Atu6178 0.67 +0.4 194,061 + Atu6178 0.68 +1.2 194,108 + Atu6178 0.74 +1.2 194,108 + Atu6178 0.74 +1.3 194,109 - Atu6178 0.74 +2.0 194,109 - Atu6178 0.74 -0.6 194,129 + Atu6178 0.77 +0.5 194,146 + Atu6178 0.79 +0.7 194,152 + Atu6178 0.80 +2.0 194,152 + Atu6178 0.80 +3.1 194,152 + Atu6178 0.80 +1.2 194,152 - Atu6178 0.80 +1.4 194,152 - Atu6178 0.80 +1.3 194,157 - Atu6178 0.80 +1.3 194,165 + Atu6178 0.81 +1.6 194,173 - Atu6178 0.82 +1.6 194,216 - Atu6178 0.88 +1.2 194,219 + Atu6178 0.88 +1.2 194,219 + Atu6178 0.88 +1.7 194,227 - Atu6178 0.89 +1.4 194,227 - Atu6178 0.89 +0.1 194,237 - +2.2 194,246 + +0.4 194,269 + +1.3 194,302 + -0.6 194,317 + +0.3 194,385 + +0.4 194,385 + +0.1 194,404 + +0.7 194,409 + +0.2 194,412 - -1.0 194,431 + +1.9 194,437 + +0.8 194,439 - +0.5 194,453 - -0.2 194,568 + Atu6179 0.20 +0.8 194,647 - Atu6179 0.33 -1.5 194,669 + Atu6179 0.36 -0.4 194,702 - Atu6179 0.42 +2.4 194,728 + Atu6179 0.46 -0.1 194,804 - Atu6179 0.58 +0.6 194,868 + Atu6179 0.69 -1.7 194,868 + Atu6179 0.69 -0.7 194,876 - Atu6179 0.70 +0.2 194,896 + Atu6179 0.73 +0.4 194,904 - Atu6179 0.75 -1.1 194,904 - Atu6179 0.75 +0.6 195,040 - -0.9 195,059 - +1.4 195,066 + +1.6 195,066 + -0.0 195,074 - +1.1 195,074 - -0.7 195,074 - +2.5 195,104 - +0.4 195,165 - Atu6180 0.15 +0.5 195,237 - Atu6180 0.25 -0.5 195,239 + Atu6180 0.26 -0.7 195,245 - Atu6180 0.27 -0.3 195,272 - Atu6180 0.30 +1.0 195,318 - Atu6180 0.37 -1.0 195,326 - Atu6180 0.38 -0.7 195,415 - Atu6180 0.51 -0.4 195,415 - Atu6180 0.51 +1.8 195,415 - Atu6180 0.51 +0.9 195,418 + Atu6180 0.51 -0.5 195,434 + Atu6180 0.54 +0.8 195,434 + Atu6180 0.54 -0.2 195,434 + Atu6180 0.54 -0.3 195,442 - Atu6180 0.55 +0.2 195,452 - Atu6180 0.56 +0.2 195,476 - Atu6180 0.60 -0.8 195,523 - Atu6180 0.67 +0.4 195,525 + Atu6180 0.67 -0.2 195,533 - Atu6180 0.68 -0.2 195,535 + Atu6180 0.68 -1.0 195,535 + Atu6180 0.68 -1.1 195,535 + Atu6180 0.68 -0.3 195,535 + Atu6180 0.68 -1.5 195,536 + Atu6180 0.68 -0.9 195,569 - Atu6180 0.73 +1.0 195,589 + Atu6180 0.76 -0.0 195,589 - Atu6180 0.76 -0.2 195,589 - Atu6180 0.76 -0.4 195,633 + Atu6180 0.82 -0.4 195,700 - +0.6 195,993 + -0.7 196,036 + +0.6 196,037 - +0.1 196,044 - +1.0 196,048 + +0.4 196,071 - Atu6181 0.10 -1.7 196,104 - Atu6181 0.18 +0.5 196,178 + Atu6181 0.34 +0.6 196,185 + Atu6181 0.36 +0.2 196,192 + Atu6181 0.37 +0.7 196,210 + Atu6181 0.41 -0.5 196,266 - Atu6181 0.54 -0.7 196,289 - Atu6181 0.59 +0.2 196,289 - Atu6181 0.59 -1.2 196,289 - Atu6181 0.59 +1.5 196,312 - Atu6181 0.64 -0.1 196,386 + Atu6181 0.81 -1.2 196,396 - Atu6181 0.83 +1.6 196,459 - +0.9 196,459 - -2.3 196,459 - +1.6 196,480 + +1.0 196,566 - +0.3 196,606 + +0.0 196,606 + +2.1 196,606 + +1.6 196,614 - -0.1 196,614 - +1.3 196,692 - Atu6182 0.14 -0.2 196,694 - Atu6182 0.14 -0.6 196,740 - Atu6182 0.18 -0.6 196,747 - Atu6182 0.18 +1.3
Or see this region's nucleotide sequence