Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0759 and Atu0760 are separated by 56 nucleotides Atu0760 and Atu0761 are separated by 30 nucleotides Atu0761 and Atu0762 are separated by 213 nucleotides Atu0762 and Atu0763 overlap by 12 nucleotides
Atu0759: Atu0759 - hypothetical protein, at 756,484 to 756,933
Atu0759
Atu0760: Atu0760 - pyridoxamine 5'-phosphate oxidase, at 756,990 to 757,610
Atu0760
Atu0761: Atu0761 - hypothetical protein, at 757,641 to 758,360
Atu0761
Atu0762: Atu0762 - hypothetical protein, at 758,574 to 758,882
Atu0762
Atu0763: Atu0763 - hydrolase, at 758,871 to 759,545
Atu0763
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 756.665 kb on + strand, within Atu0759 at 756.673 kb on - strand, within Atu0759 at 756.708 kb on + strand, within Atu0759 at 756.739 kb on + strand, within Atu0759 at 756.747 kb on - strand, within Atu0759 at 756.749 kb on + strand, within Atu0759 at 756.757 kb on - strand, within Atu0759 at 756.816 kb on + strand, within Atu0759 at 756.816 kb on + strand, within Atu0759 at 756.824 kb on - strand, within Atu0759 at 756.824 kb on - strand, within Atu0759 at 756.843 kb on - strand, within Atu0759 at 757.620 kb on + strand at 757.620 kb on + strand at 757.710 kb on - strand at 757.856 kb on - strand, within Atu0761 at 757.856 kb on - strand, within Atu0761 at 757.937 kb on - strand, within Atu0761 at 757.971 kb on - strand, within Atu0761 at 758.023 kb on + strand, within Atu0761 at 758.042 kb on + strand, within Atu0761 at 758.051 kb on - strand, within Atu0761 at 758.077 kb on - strand, within Atu0761 at 758.081 kb on - strand, within Atu0761 at 758.123 kb on - strand, within Atu0761 at 758.259 kb on - strand, within Atu0761 at 758.347 kb on + strand at 758.369 kb on + strand at 758.377 kb on - strand at 758.377 kb on - strand at 758.377 kb on - strand at 758.422 kb on + strand at 758.543 kb on + strand at 758.700 kb on + strand, within Atu0762 at 758.726 kb on - strand, within Atu0762 at 758.831 kb on - strand, within Atu0762 at 758.885 kb on + strand at 759.109 kb on + strand, within Atu0763 at 759.154 kb on + strand, within Atu0763 at 759.188 kb on + strand, within Atu0763 at 759.240 kb on + strand, within Atu0763 at 759.248 kb on + strand, within Atu0763 at 759.248 kb on - strand, within Atu0763 at 759.249 kb on + strand, within Atu0763 at 759.278 kb on + strand, within Atu0763 at 759.281 kb on - strand, within Atu0763
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 756,665 + Atu0759 0.40 +0.2 756,673 - Atu0759 0.42 +0.0 756,708 + Atu0759 0.50 -0.4 756,739 + Atu0759 0.57 -0.7 756,747 - Atu0759 0.58 -1.6 756,749 + Atu0759 0.59 +0.0 756,757 - Atu0759 0.61 -0.6 756,816 + Atu0759 0.74 -1.0 756,816 + Atu0759 0.74 -0.0 756,824 - Atu0759 0.76 -1.6 756,824 - Atu0759 0.76 +1.1 756,843 - Atu0759 0.80 +0.5 757,620 + +2.5 757,620 + -0.4 757,710 - +0.8 757,856 - Atu0761 0.30 -0.5 757,856 - Atu0761 0.30 +0.4 757,937 - Atu0761 0.41 -1.5 757,971 - Atu0761 0.46 +0.1 758,023 + Atu0761 0.53 -0.4 758,042 + Atu0761 0.56 +0.0 758,051 - Atu0761 0.57 +0.1 758,077 - Atu0761 0.61 +0.1 758,081 - Atu0761 0.61 +0.2 758,123 - Atu0761 0.67 -0.9 758,259 - Atu0761 0.86 -0.2 758,347 + -0.1 758,369 + -0.6 758,377 - -1.8 758,377 - +1.0 758,377 - +1.2 758,422 + +0.1 758,543 + +5.6 758,700 + Atu0762 0.41 -0.2 758,726 - Atu0762 0.49 -1.1 758,831 - Atu0762 0.83 -1.6 758,885 + +0.3 759,109 + Atu0763 0.35 +1.5 759,154 + Atu0763 0.42 +0.0 759,188 + Atu0763 0.47 -0.2 759,240 + Atu0763 0.55 -0.1 759,248 + Atu0763 0.56 -0.3 759,248 - Atu0763 0.56 +0.6 759,249 + Atu0763 0.56 -1.8 759,278 + Atu0763 0.60 -0.4 759,281 - Atu0763 0.61 -0.3
Or see this region's nucleotide sequence