Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0174 and Atu0175 are separated by 216 nucleotides Atu0175 and Atu0176 overlap by 4 nucleotides Atu0176 and Atu0177 are separated by 67 nucleotides Atu0177 and Atu0178 overlap by 4 nucleotides
Atu0174: Atu0174 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 178,483 to 179,343
Atu0174
Atu0175: Atu0175 - acetyltransferase, at 179,560 to 180,177
Atu0175
Atu0176: Atu0176 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,174 to 180,881
Atu0176
Atu0177: Atu0177 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,949 to 181,725
Atu0177
Atu0178: Atu0178 - hypothetical protein, at 181,722 to 182,624
Atu0178
Position (kb) 180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 179.265 kb on + strand at 179.289 kb on + strand at 179.312 kb on - strand at 179.331 kb on + strand at 179.369 kb on + strand at 179.448 kb on + strand at 179.456 kb on - strand at 179.512 kb on + strand at 179.527 kb on - strand at 179.631 kb on - strand, within Atu0175 at 179.636 kb on - strand, within Atu0175 at 179.646 kb on - strand, within Atu0175 at 179.646 kb on - strand, within Atu0175 at 179.663 kb on + strand, within Atu0175 at 179.763 kb on + strand, within Atu0175 at 179.763 kb on + strand, within Atu0175 at 179.765 kb on - strand, within Atu0175 at 179.775 kb on + strand, within Atu0175 at 179.791 kb on - strand, within Atu0175 at 179.817 kb on + strand, within Atu0175 at 179.926 kb on + strand, within Atu0175 at 179.935 kb on + strand, within Atu0175 at 179.979 kb on + strand, within Atu0175 at 180.045 kb on - strand, within Atu0175 at 180.052 kb on - strand, within Atu0175 at 180.072 kb on + strand, within Atu0175 at 180.165 kb on + strand at 180.225 kb on + strand at 180.267 kb on - strand, within Atu0176 at 180.301 kb on + strand, within Atu0176 at 180.305 kb on - strand, within Atu0176 at 180.569 kb on - strand, within Atu0176 at 180.663 kb on - strand, within Atu0176 at 180.663 kb on - strand, within Atu0176 at 180.699 kb on + strand, within Atu0176 at 180.706 kb on + strand, within Atu0176 at 180.741 kb on + strand, within Atu0176 at 181.031 kb on - strand, within Atu0177 at 181.078 kb on - strand, within Atu0177 at 181.078 kb on - strand, within Atu0177 at 181.127 kb on + strand, within Atu0177 at 181.146 kb on + strand, within Atu0177 at 181.156 kb on - strand, within Atu0177 at 181.158 kb on + strand, within Atu0177 at 181.373 kb on + strand, within Atu0177 at 181.420 kb on - strand, within Atu0177 at 181.533 kb on + strand, within Atu0177 at 181.553 kb on + strand, within Atu0177 at 181.635 kb on + strand, within Atu0177 at 181.643 kb on - strand, within Atu0177 at 181.754 kb on - strand at 181.835 kb on - strand, within Atu0178 at 181.836 kb on + strand, within Atu0178
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 179,265 + +0.3 179,289 + +0.4 179,312 - -0.2 179,331 + +0.6 179,369 + -0.2 179,448 + +0.1 179,456 - +0.5 179,512 + +0.3 179,527 - -0.0 179,631 - Atu0175 0.11 +1.1 179,636 - Atu0175 0.12 +0.4 179,646 - Atu0175 0.14 +0.3 179,646 - Atu0175 0.14 +0.2 179,663 + Atu0175 0.17 -0.2 179,763 + Atu0175 0.33 +1.3 179,763 + Atu0175 0.33 -0.8 179,765 - Atu0175 0.33 -1.0 179,775 + Atu0175 0.35 +1.7 179,791 - Atu0175 0.37 +0.7 179,817 + Atu0175 0.42 -0.2 179,926 + Atu0175 0.59 -0.7 179,935 + Atu0175 0.61 +0.5 179,979 + Atu0175 0.68 -0.2 180,045 - Atu0175 0.78 -0.6 180,052 - Atu0175 0.80 +0.1 180,072 + Atu0175 0.83 +0.2 180,165 + -2.4 180,225 + +0.0 180,267 - Atu0176 0.13 +0.8 180,301 + Atu0176 0.18 +1.0 180,305 - Atu0176 0.19 -0.7 180,569 - Atu0176 0.56 -0.3 180,663 - Atu0176 0.69 -0.4 180,663 - Atu0176 0.69 +0.1 180,699 + Atu0176 0.74 +0.7 180,706 + Atu0176 0.75 +0.6 180,741 + Atu0176 0.80 +0.3 181,031 - Atu0177 0.11 +0.4 181,078 - Atu0177 0.17 +0.0 181,078 - Atu0177 0.17 +0.4 181,127 + Atu0177 0.23 -0.1 181,146 + Atu0177 0.25 -0.1 181,156 - Atu0177 0.27 +0.7 181,158 + Atu0177 0.27 +0.3 181,373 + Atu0177 0.55 -0.1 181,420 - Atu0177 0.61 -0.0 181,533 + Atu0177 0.75 +0.1 181,553 + Atu0177 0.78 +1.6 181,635 + Atu0177 0.88 +0.3 181,643 - Atu0177 0.89 -0.2 181,754 - +0.4 181,835 - Atu0178 0.13 +0.0 181,836 + Atu0178 0.13 +0.4
Or see this region's nucleotide sequence