Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0875 and Atu0876 are separated by 85 nucleotides Atu0876 and Atu0877 are separated by 112 nucleotides Atu0877 and Atu0878 overlap by 9 nucleotides Atu0878 and Atu0879 are separated by 134 nucleotides
Atu0875: Atu0875 - hypothetical protein, at 872,284 to 872,763
Atu0875
Atu0876: Atu0876 - superoxide dismutase, at 872,849 to 873,451
Atu0876
Atu0877: Atu0877 - hypothetical protein, at 873,564 to 874,415
Atu0877
Atu0878: Atu0878 - hypothetical protein, at 874,407 to 875,138
Atu0878
Atu0879: Atu0879 - RhtB family transporter, at 875,273 to 875,917
Atu0879
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.606 kb on - strand, within Atu0875 at 872.606 kb on - strand, within Atu0875 at 872.631 kb on - strand, within Atu0875 at 872.658 kb on - strand, within Atu0875 at 872.671 kb on + strand, within Atu0875 at 872.770 kb on + strand at 872.780 kb on + strand at 872.786 kb on + strand at 872.807 kb on + strand at 872.815 kb on - strand at 872.838 kb on - strand at 873.017 kb on - strand, within Atu0876 at 873.186 kb on - strand, within Atu0876 at 873.222 kb on - strand, within Atu0876 at 873.504 kb on - strand at 873.568 kb on - strand at 873.650 kb on - strand, within Atu0877 at 873.704 kb on - strand, within Atu0877 at 873.789 kb on - strand, within Atu0877 at 874.013 kb on + strand, within Atu0877 at 874.021 kb on - strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.043 kb on + strand, within Atu0877 at 874.090 kb on + strand, within Atu0877 at 874.180 kb on - strand, within Atu0877 at 874.192 kb on + strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.200 kb on - strand, within Atu0877 at 874.330 kb on - strand at 874.434 kb on - strand at 874.437 kb on + strand at 874.445 kb on - strand at 874.615 kb on + strand, within Atu0878 at 874.672 kb on + strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.680 kb on - strand, within Atu0878 at 874.690 kb on - strand, within Atu0878 at 874.736 kb on - strand, within Atu0878 at 874.761 kb on - strand, within Atu0878 at 874.797 kb on - strand, within Atu0878 at 874.879 kb on + strand, within Atu0878 at 874.940 kb on + strand, within Atu0878 at 874.948 kb on - strand, within Atu0878 at 874.996 kb on + strand, within Atu0878 at 875.004 kb on - strand, within Atu0878 at 875.010 kb on - strand, within Atu0878 at 875.110 kb on + strand at 875.118 kb on - strand at 875.162 kb on - strand at 875.264 kb on + strand at 875.336 kb on + strand at 875.342 kb on + strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.350 kb on - strand, within Atu0879 at 875.359 kb on + strand, within Atu0879
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 872,606 - Atu0875 0.67 -1.2 872,606 - Atu0875 0.67 +0.2 872,631 - Atu0875 0.72 -0.4 872,658 - Atu0875 0.78 +0.6 872,671 + Atu0875 0.81 -0.2 872,770 + +1.0 872,780 + -1.4 872,786 + -1.7 872,807 + -1.2 872,815 - -0.1 872,838 - -2.0 873,017 - Atu0876 0.28 -1.9 873,186 - Atu0876 0.56 -0.7 873,222 - Atu0876 0.62 -1.2 873,504 - -0.3 873,568 - -1.0 873,650 - Atu0877 0.10 -0.6 873,704 - Atu0877 0.16 +0.2 873,789 - Atu0877 0.26 +0.5 874,013 + Atu0877 0.53 +1.1 874,021 - Atu0877 0.54 +0.9 874,043 + Atu0877 0.56 +0.5 874,043 + Atu0877 0.56 +1.0 874,090 + Atu0877 0.62 +0.6 874,180 - Atu0877 0.72 -0.0 874,192 + Atu0877 0.74 +0.7 874,200 - Atu0877 0.75 +0.1 874,200 - Atu0877 0.75 +0.2 874,200 - Atu0877 0.75 +0.5 874,200 - Atu0877 0.75 +1.9 874,330 - +0.3 874,434 - -1.7 874,437 + -0.7 874,445 - -1.1 874,615 + Atu0878 0.28 -0.7 874,672 + Atu0878 0.36 -0.4 874,680 - Atu0878 0.37 -1.2 874,680 - Atu0878 0.37 +0.6 874,680 - Atu0878 0.37 -0.9 874,690 - Atu0878 0.39 -0.1 874,736 - Atu0878 0.45 -0.4 874,761 - Atu0878 0.48 -0.7 874,797 - Atu0878 0.53 +0.7 874,879 + Atu0878 0.64 +0.8 874,940 + Atu0878 0.73 +1.7 874,948 - Atu0878 0.74 +1.5 874,996 + Atu0878 0.80 -1.0 875,004 - Atu0878 0.82 -0.6 875,010 - Atu0878 0.82 -0.1 875,110 + +0.1 875,118 - -0.2 875,162 - -0.7 875,264 + -0.7 875,336 + -0.3 875,342 + Atu0879 0.11 +0.0 875,350 - Atu0879 0.12 -0.1 875,350 - Atu0879 0.12 +0.6 875,359 + Atu0879 0.13 -0.9
Or see this region's nucleotide sequence