Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0510 and Atu0511 overlap by 1 nucleotides Atu0511 and Atu8131 overlap by 1 nucleotides
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Atu0511: Atu0511 - pH adaption potassium efflux system protein, at 499,889 to 500,224
Atu0511
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.122 kb on - strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.277 kb on + strand, within Atu0510 at 499.288 kb on + strand, within Atu0510 at 499.296 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.322 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.371 kb on + strand, within Atu0510 at 499.377 kb on - strand, within Atu0510 at 499.615 kb on - strand, within Atu0510 at 499.652 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.761 kb on + strand at 499.924 kb on + strand, within Atu0511 at 499.928 kb on - strand, within Atu0511 at 499.932 kb on - strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.966 kb on - strand, within Atu0511 at 500.014 kb on + strand, within Atu0511 at 500.029 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.151 kb on - strand, within Atu0511 at 500.444 kb on - strand at 500.470 kb on - strand at 500.514 kb on + strand at 500.626 kb on + strand, within Atu8131 at 500.705 kb on + strand, within Atu8131 at 500.814 kb on - strand, within Atu8131 at 500.838 kb on - strand, within Atu8131 at 501.011 kb on - strand, within Atu8131 at 501.025 kb on + strand, within Atu8131 at 501.045 kb on - strand, within Atu8131 at 501.103 kb on + strand, within Atu8131
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 499,122 - Atu0510 0.53 -0.3 499,255 + Atu0510 0.61 +0.6 499,255 + Atu0510 0.61 -0.1 499,277 + Atu0510 0.63 -0.5 499,288 + Atu0510 0.63 -0.8 499,296 - Atu0510 0.64 +1.6 499,320 - Atu0510 0.65 -0.5 499,320 - Atu0510 0.65 +0.2 499,322 + Atu0510 0.65 -0.7 499,369 + Atu0510 0.68 -0.7 499,369 + Atu0510 0.68 -1.2 499,371 + Atu0510 0.68 -0.6 499,377 - Atu0510 0.69 -0.2 499,615 - Atu0510 0.83 -0.6 499,652 - Atu0510 0.86 -0.5 499,681 - Atu0510 0.87 -0.8 499,681 - Atu0510 0.87 -0.6 499,761 + -0.4 499,924 + Atu0511 0.10 +1.0 499,928 - Atu0511 0.12 -0.3 499,932 - Atu0511 0.13 -1.3 499,953 + Atu0511 0.19 -0.0 499,953 + Atu0511 0.19 -2.9 499,961 - Atu0511 0.21 -0.9 499,961 - Atu0511 0.21 -0.9 499,966 - Atu0511 0.23 +0.7 500,014 + Atu0511 0.37 -0.8 500,029 + Atu0511 0.42 -0.5 500,112 + Atu0511 0.66 -1.0 500,112 + Atu0511 0.66 -0.7 500,151 - Atu0511 0.78 -0.2 500,444 - -1.0 500,470 - -0.5 500,514 + -0.2 500,626 + Atu8131 0.14 -0.2 500,705 + Atu8131 0.16 +1.8 500,814 - Atu8131 0.20 -0.1 500,838 - Atu8131 0.21 -0.0 501,011 - Atu8131 0.27 -0.4 501,025 + Atu8131 0.27 -1.4 501,045 - Atu8131 0.28 -0.2 501,103 + Atu8131 0.30 -1.3
Or see this region's nucleotide sequence