Strain Fitness in Pseudomonas putida KT2440 around PP_5148

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5146 and PP_5147 are separated by 141 nucleotidesPP_5147 and PP_5148 are separated by 130 nucleotidesPP_5148 and PP_5149 are separated by 147 nucleotides PP_5146: PP_5146 - RNA pyrophosphohydrolase, at 5,872,675 to 5,873,154 _5146 PP_5147: PP_5147 - Hydrolase, haloacid dehalogenase-like family, at 5,873,296 to 5,873,952 _5147 PP_5148: PP_5148 - conserved membrane protein of unknown function, at 5,874,083 to 5,874,508 _5148 PP_5149: PP_5149 - threonine deaminase, at 5,874,656 to 5,876,170 _5149 Position (kb) 5874 5875Strain fitness (log2 ratio) -2 -1 0 1 2at 5873.086 kb on + strand, within PP_5146at 5873.086 kb on + strand, within PP_5146at 5873.326 kb on - strandat 5873.326 kb on - strandat 5873.365 kb on + strand, within PP_5147at 5873.365 kb on + strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.366 kb on - strand, within PP_5147at 5873.402 kb on - strand, within PP_5147at 5873.402 kb on - strand, within PP_5147at 5873.434 kb on + strand, within PP_5147at 5873.434 kb on + strand, within PP_5147at 5873.435 kb on - strand, within PP_5147at 5873.435 kb on - strand, within PP_5147at 5873.464 kb on + strand, within PP_5147at 5873.719 kb on + strand, within PP_5147at 5873.720 kb on - strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5874.034 kb on + strandat 5874.034 kb on + strandat 5874.056 kb on + strandat 5874.057 kb on - strandat 5874.157 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.171 kb on - strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.387 kb on + strand, within PP_5148at 5874.388 kb on - strand, within PP_5148at 5874.523 kb on + strandat 5874.524 kb on - strandat 5874.524 kb on - strandat 5874.576 kb on + strandat 5874.577 kb on - strandat 5874.603 kb on - strandat 5874.603 kb on - strandat 5874.644 kb on + strandat 5874.645 kb on - strandat 5874.675 kb on + strandat 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.938 kb on - strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.947 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.095 kb on + strand, within PP_5149at 5875.127 kb on - strand, within PP_5149at 5875.293 kb on + strand, within PP_5149at 5875.293 kb on + strand, within PP_5149at 5875.294 kb on - strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.296 kb on - strand, within PP_5149at 5875.305 kb on + strand, within PP_5149at 5875.368 kb on + strand, within PP_5149at 5875.368 kb on + strand, within PP_5149at 5875.369 kb on - strand, within PP_5149at 5875.369 kb on - strand, within PP_5149at 5875.402 kb on + strand, within PP_5149at 5875.442 kb on - strand, within PP_5149

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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5,873,086 + PP_5146 0.86 +1.2
5,873,086 + PP_5146 0.86 -0.2
5,873,326 - -1.3
5,873,326 - -0.7
5,873,365 + PP_5147 0.11 +0.3
5,873,365 + PP_5147 0.11 -0.5
5,873,366 - PP_5147 0.11 +0.2
5,873,366 - PP_5147 0.11 +0.5
5,873,366 - PP_5147 0.11 +1.6
5,873,402 - PP_5147 0.16 +0.3
5,873,402 - PP_5147 0.16 +1.0
5,873,434 + PP_5147 0.21 +0.5
5,873,434 + PP_5147 0.21 -0.0
5,873,435 - PP_5147 0.21 -0.1
5,873,435 - PP_5147 0.21 +0.2
5,873,464 + PP_5147 0.26 +0.7
5,873,719 + PP_5147 0.64 -0.4
5,873,720 - PP_5147 0.65 +0.9
5,873,730 + PP_5147 0.66 +0.9
5,873,730 + PP_5147 0.66 -0.1
5,873,734 - PP_5147 0.67 -0.3
5,873,734 - PP_5147 0.67 -0.3
5,873,739 + PP_5147 0.67 +0.5
5,873,739 + PP_5147 0.67 +0.3
5,873,740 - PP_5147 0.68 -0.6
5,873,740 - PP_5147 0.68 +0.1
5,873,740 - PP_5147 0.68 +0.5
5,873,741 + PP_5147 0.68 +0.2
5,873,741 + PP_5147 0.68 +0.5
5,873,741 + PP_5147 0.68 +0.1
5,873,741 + PP_5147 0.68 -1.0
5,873,742 - PP_5147 0.68 -0.9
5,873,742 - PP_5147 0.68 -0.0
5,873,742 - PP_5147 0.68 -0.9
5,873,742 - PP_5147 0.68 +0.8
5,873,818 + PP_5147 0.79 -0.4
5,873,818 + PP_5147 0.79 +0.4
5,873,819 - PP_5147 0.80 +0.3
5,873,819 - PP_5147 0.80 -0.2
5,873,819 - PP_5147 0.80 +0.2
5,873,824 + PP_5147 0.80 -0.3
5,873,824 + PP_5147 0.80 -0.5
5,873,825 - PP_5147 0.81 -0.0
5,873,825 - PP_5147 0.81 +0.8
5,874,034 + +0.3
5,874,034 + +0.6
5,874,056 + +0.2
5,874,057 - -0.4
5,874,157 + PP_5148 0.17 -0.0
5,874,170 + PP_5148 0.20 -1.3
5,874,170 + PP_5148 0.20 +1.3
5,874,171 - PP_5148 0.21 +0.4
5,874,238 + PP_5148 0.36 -0.1
5,874,238 + PP_5148 0.36 +0.5
5,874,238 + PP_5148 0.36 +0.5
5,874,238 + PP_5148 0.36 -0.1
5,874,239 - PP_5148 0.37 +0.1
5,874,239 - PP_5148 0.37 -0.4
5,874,239 - PP_5148 0.37 +0.2
5,874,239 - PP_5148 0.37 +0.4
5,874,239 - PP_5148 0.37 +0.9
5,874,296 + PP_5148 0.50 +0.2
5,874,296 + PP_5148 0.50 +0.3
5,874,297 - PP_5148 0.50 +0.8
5,874,297 - PP_5148 0.50 +1.8
5,874,387 + PP_5148 0.71 -2.4
5,874,388 - PP_5148 0.72 +0.8
5,874,523 + +0.3
5,874,524 - -0.1
5,874,524 - -0.1
5,874,576 + -0.2
5,874,577 - +0.1
5,874,603 - -1.9
5,874,603 - -1.4
5,874,644 + +0.1
5,874,645 - +0.5
5,874,675 + +0.7
5,874,937 + PP_5149 0.19 -0.5
5,874,937 + PP_5149 0.19 -0.2
5,874,937 + PP_5149 0.19 -0.3
5,874,938 - PP_5149 0.19 -0.3
5,874,946 + PP_5149 0.19 +0.2
5,874,946 + PP_5149 0.19 +0.6
5,874,947 - PP_5149 0.19 -0.9
5,875,067 - PP_5149 0.27 -0.3
5,875,067 - PP_5149 0.27 -0.5
5,875,067 - PP_5149 0.27 -0.1
5,875,095 + PP_5149 0.29 +0.1
5,875,127 - PP_5149 0.31 +0.2
5,875,293 + PP_5149 0.42 -0.2
5,875,293 + PP_5149 0.42 +0.6
5,875,294 - PP_5149 0.42 -0.1
5,875,295 + PP_5149 0.42 +0.7
5,875,295 + PP_5149 0.42 +0.1
5,875,295 + PP_5149 0.42 +0.4
5,875,295 + PP_5149 0.42 +0.1
5,875,295 + PP_5149 0.42 +0.7
5,875,295 + PP_5149 0.42 +0.6
5,875,296 - PP_5149 0.42 +0.6
5,875,305 + PP_5149 0.43 +0.3
5,875,368 + PP_5149 0.47 -1.6
5,875,368 + PP_5149 0.47 -1.0
5,875,369 - PP_5149 0.47 -0.4
5,875,369 - PP_5149 0.47 -1.4
5,875,402 + PP_5149 0.49 -0.8
5,875,442 - PP_5149 0.52 -0.4

Or see this region's nucleotide sequence