Strain Fitness in Pseudomonas putida KT2440 around PP_5064

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5063 and PP_5064 are separated by 77 nucleotidesPP_5064 and PP_5065 are separated by 42 nucleotides PP_5063: PP_5063 - betaine aldehyde dehydrogenase, NAD-dependent, at 5,774,134 to 5,775,606 _5063 PP_5064: PP_5064 - choline dehydrogenase, at 5,775,684 to 5,777,381 _5064 PP_5065: PP_5065 - conserved protein of unknown function, at 5,777,424 to 5,779,574 _5065 Position (kb) 5775 5776 5777 5778Strain fitness (log2 ratio) -2 -1 0 1 2at 5774.971 kb on + strand, within PP_5063at 5774.971 kb on + strand, within PP_5063at 5774.972 kb on - strand, within PP_5063at 5775.325 kb on + strand, within PP_5063at 5775.326 kb on - strand, within PP_5063at 5775.499 kb on + strandat 5775.550 kb on + strandat 5775.551 kb on - strandat 5775.551 kb on - strandat 5775.677 kb on + strandat 5775.703 kb on - strandat 5775.775 kb on + strandat 5775.775 kb on + strandat 5775.775 kb on + strandat 5775.775 kb on + strandat 5775.879 kb on + strand, within PP_5064at 5775.901 kb on - strand, within PP_5064at 5775.901 kb on - strand, within PP_5064at 5775.901 kb on - strand, within PP_5064at 5775.975 kb on + strand, within PP_5064at 5775.975 kb on + strand, within PP_5064at 5775.975 kb on + strand, within PP_5064at 5775.976 kb on - strand, within PP_5064at 5775.976 kb on - strand, within PP_5064at 5775.976 kb on - strand, within PP_5064at 5776.041 kb on + strand, within PP_5064at 5776.041 kb on + strand, within PP_5064at 5776.041 kb on + strand, within PP_5064at 5776.041 kb on + strand, within PP_5064at 5776.102 kb on - strand, within PP_5064at 5776.102 kb on - strand, within PP_5064at 5776.102 kb on - strand, within PP_5064at 5776.187 kb on - strand, within PP_5064at 5776.299 kb on + strand, within PP_5064at 5776.398 kb on + strand, within PP_5064at 5776.399 kb on - strand, within PP_5064at 5776.399 kb on - strand, within PP_5064at 5776.399 kb on - strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.596 kb on + strand, within PP_5064at 5776.597 kb on - strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.773 kb on + strand, within PP_5064at 5776.774 kb on - strand, within PP_5064at 5776.797 kb on - strand, within PP_5064at 5776.800 kb on + strand, within PP_5064at 5776.800 kb on + strand, within PP_5064at 5776.801 kb on - strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.929 kb on + strand, within PP_5064at 5776.930 kb on - strand, within PP_5064at 5776.930 kb on - strand, within PP_5064at 5776.990 kb on + strand, within PP_5064at 5777.320 kb on - strandat 5777.322 kb on + strandat 5777.322 kb on + strandat 5777.322 kb on + strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.323 kb on - strandat 5777.587 kb on + strandat 5777.629 kb on + strandat 5777.721 kb on + strand, within PP_5065at 5777.722 kb on - strand, within PP_5065at 5777.722 kb on - strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.725 kb on + strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.726 kb on - strand, within PP_5065at 5777.803 kb on + strand, within PP_5065at 5777.804 kb on - strand, within PP_5065at 5777.804 kb on - strand, within PP_5065at 5777.917 kb on + strand, within PP_5065at 5777.933 kb on + strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5777.934 kb on - strand, within PP_5065at 5778.015 kb on - strand, within PP_5065at 5778.035 kb on - strand, within PP_5065at 5778.106 kb on + strand, within PP_5065at 5778.106 kb on + strand, within PP_5065at 5778.107 kb on - strand, within PP_5065at 5778.130 kb on + strand, within PP_5065at 5778.130 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.250 kb on + strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.251 kb on - strand, within PP_5065at 5778.351 kb on + strand, within PP_5065at 5778.351 kb on + strand, within PP_5065at 5778.352 kb on - strand, within PP_5065at 5778.352 kb on - strand, within PP_5065at 5778.354 kb on - strand, within PP_5065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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5,774,971 + PP_5063 0.57 +0.1
5,774,971 + PP_5063 0.57 +0.1
5,774,972 - PP_5063 0.57 -0.2
5,775,325 + PP_5063 0.81 +2.1
5,775,326 - PP_5063 0.81 -1.9
5,775,499 + +0.0
5,775,550 + +1.5
5,775,551 - +0.4
5,775,551 - -0.5
5,775,677 + +0.6
5,775,703 - -1.9
5,775,775 + -1.1
5,775,775 + -1.2
5,775,775 + +1.3
5,775,775 + +0.1
5,775,879 + PP_5064 0.11 -0.3
5,775,901 - PP_5064 0.13 +0.7
5,775,901 - PP_5064 0.13 +0.9
5,775,901 - PP_5064 0.13 +0.5
5,775,975 + PP_5064 0.17 -0.4
5,775,975 + PP_5064 0.17 +0.9
5,775,975 + PP_5064 0.17 +0.5
5,775,976 - PP_5064 0.17 -0.8
5,775,976 - PP_5064 0.17 +0.2
5,775,976 - PP_5064 0.17 +1.4
5,776,041 + PP_5064 0.21 -1.5
5,776,041 + PP_5064 0.21 -1.1
5,776,041 + PP_5064 0.21 -0.1
5,776,041 + PP_5064 0.21 +0.1
5,776,102 - PP_5064 0.25 -0.8
5,776,102 - PP_5064 0.25 -0.4
5,776,102 - PP_5064 0.25 -1.5
5,776,187 - PP_5064 0.30 -0.8
5,776,299 + PP_5064 0.36 +0.3
5,776,398 + PP_5064 0.42 +0.6
5,776,399 - PP_5064 0.42 +0.6
5,776,399 - PP_5064 0.42 +0.5
5,776,399 - PP_5064 0.42 +0.6
5,776,596 + PP_5064 0.54 +1.3
5,776,596 + PP_5064 0.54 +1.3
5,776,596 + PP_5064 0.54 +0.2
5,776,596 + PP_5064 0.54 +0.7
5,776,597 - PP_5064 0.54 +0.0
5,776,773 + PP_5064 0.64 +0.0
5,776,773 + PP_5064 0.64 +0.5
5,776,773 + PP_5064 0.64 -0.2
5,776,773 + PP_5064 0.64 +1.3
5,776,774 - PP_5064 0.64 -0.6
5,776,797 - PP_5064 0.66 -0.6
5,776,800 + PP_5064 0.66 -1.2
5,776,800 + PP_5064 0.66 +1.1
5,776,801 - PP_5064 0.66 +0.2
5,776,929 + PP_5064 0.73 -0.4
5,776,929 + PP_5064 0.73 +1.3
5,776,929 + PP_5064 0.73 +1.9
5,776,929 + PP_5064 0.73 +1.1
5,776,929 + PP_5064 0.73 +0.1
5,776,930 - PP_5064 0.73 +0.1
5,776,930 - PP_5064 0.73 +0.7
5,776,990 + PP_5064 0.77 +0.3
5,777,320 - -0.6
5,777,322 + +0.4
5,777,322 + -0.9
5,777,322 + -0.7
5,777,323 - +0.4
5,777,323 - -1.1
5,777,323 - +0.7
5,777,323 - +0.1
5,777,587 + -0.1
5,777,629 + +0.6
5,777,721 + PP_5065 0.14 +0.5
5,777,722 - PP_5065 0.14 +0.7
5,777,722 - PP_5065 0.14 -0.2
5,777,725 + PP_5065 0.14 +0.3
5,777,725 + PP_5065 0.14 +0.7
5,777,725 + PP_5065 0.14 +1.1
5,777,725 + PP_5065 0.14 -1.9
5,777,726 - PP_5065 0.14 +0.4
5,777,726 - PP_5065 0.14 +0.2
5,777,726 - PP_5065 0.14 +0.2
5,777,803 + PP_5065 0.18 +0.1
5,777,804 - PP_5065 0.18 +0.4
5,777,804 - PP_5065 0.18 +1.4
5,777,917 + PP_5065 0.23 +0.6
5,777,933 + PP_5065 0.24 +1.1
5,777,934 - PP_5065 0.24 -1.4
5,777,934 - PP_5065 0.24 +0.3
5,777,934 - PP_5065 0.24 -1.0
5,778,015 - PP_5065 0.27 +0.7
5,778,035 - PP_5065 0.28 -0.5
5,778,106 + PP_5065 0.32 -0.1
5,778,106 + PP_5065 0.32 +0.3
5,778,107 - PP_5065 0.32 -0.2
5,778,130 + PP_5065 0.33 +0.1
5,778,130 + PP_5065 0.33 +0.2
5,778,250 + PP_5065 0.38 +0.4
5,778,250 + PP_5065 0.38 +0.0
5,778,250 + PP_5065 0.38 -0.1
5,778,250 + PP_5065 0.38 -0.2
5,778,251 - PP_5065 0.38 +0.1
5,778,251 - PP_5065 0.38 -0.7
5,778,251 - PP_5065 0.38 -0.0
5,778,251 - PP_5065 0.38 +0.0
5,778,251 - PP_5065 0.38 -0.2
5,778,251 - PP_5065 0.38 -0.3
5,778,351 + PP_5065 0.43 -0.6
5,778,351 + PP_5065 0.43 -0.0
5,778,352 - PP_5065 0.43 -0.5
5,778,352 - PP_5065 0.43 -0.1
5,778,354 - PP_5065 0.43 +0.0

Or see this region's nucleotide sequence