Strain Fitness in Agrobacterium fabrum C58 around Atu6163

Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6162 and Atu6163 are separated by 218 nucleotidesAtu6163 and Atu6164 are separated by 497 nucleotides Atu6162: Atu6162 - conserved hypothetical protein, at 177,407 to 178,117 Atu6162 Atu6163: Atu6163 - hypothetical protein, at 178,336 to 178,764 Atu6163 Atu6164: Atu6164 - trans-zeatin secretion protein, at 179,262 to 179,993 Atu6164 Position (kb) 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 177.345 kb on + strandat 177.352 kb on + strandat 177.371 kb on + strandat 177.412 kb on + strandat 177.412 kb on + strandat 177.420 kb on - strandat 177.437 kb on + strandat 177.437 kb on + strandat 177.445 kb on - strandat 177.445 kb on - strandat 177.479 kb on - strand, within Atu6162at 177.479 kb on - strand, within Atu6162at 177.507 kb on + strand, within Atu6162at 177.543 kb on - strand, within Atu6162at 177.543 kb on - strand, within Atu6162at 177.543 kb on - strand, within Atu6162at 177.543 kb on - strand, within Atu6162at 177.559 kb on + strand, within Atu6162at 177.583 kb on - strand, within Atu6162at 177.600 kb on - strand, within Atu6162at 177.605 kb on - strand, within Atu6162at 177.659 kb on - strand, within Atu6162at 177.685 kb on - strand, within Atu6162at 177.723 kb on - strand, within Atu6162at 177.753 kb on + strand, within Atu6162at 177.753 kb on + strand, within Atu6162at 177.753 kb on + strand, within Atu6162at 177.758 kb on + strand, within Atu6162at 177.766 kb on - strand, within Atu6162at 177.766 kb on - strand, within Atu6162at 177.803 kb on + strand, within Atu6162at 177.811 kb on + strand, within Atu6162at 177.811 kb on - strand, within Atu6162at 177.818 kb on + strand, within Atu6162at 177.826 kb on - strand, within Atu6162at 177.842 kb on - strand, within Atu6162at 177.859 kb on + strand, within Atu6162at 177.861 kb on + strand, within Atu6162at 177.890 kb on + strand, within Atu6162at 177.910 kb on + strand, within Atu6162at 177.917 kb on + strand, within Atu6162at 177.917 kb on + strand, within Atu6162at 177.918 kb on - strand, within Atu6162at 177.922 kb on + strand, within Atu6162at 177.922 kb on + strand, within Atu6162at 177.925 kb on - strand, within Atu6162at 177.925 kb on - strand, within Atu6162at 177.927 kb on + strand, within Atu6162at 177.930 kb on - strand, within Atu6162at 177.930 kb on - strand, within Atu6162at 177.930 kb on - strand, within Atu6162at 177.946 kb on - strand, within Atu6162at 177.946 kb on - strand, within Atu6162at 177.960 kb on + strand, within Atu6162at 177.968 kb on - strand, within Atu6162at 178.017 kb on + strand, within Atu6162at 178.038 kb on + strand, within Atu6162at 178.046 kb on - strand, within Atu6162at 178.111 kb on + strandat 178.130 kb on + strandat 178.206 kb on + strandat 178.214 kb on - strandat 178.228 kb on + strandat 178.228 kb on + strandat 178.228 kb on + strandat 178.228 kb on + strandat 178.236 kb on - strandat 178.247 kb on - strandat 178.252 kb on + strandat 178.260 kb on - strandat 178.260 kb on - strandat 178.267 kb on + strandat 178.299 kb on - strandat 178.314 kb on + strandat 178.321 kb on - strandat 178.321 kb on - strandat 178.324 kb on + strandat 178.324 kb on + strandat 178.332 kb on - strandat 178.332 kb on - strandat 178.355 kb on - strandat 178.371 kb on - strandat 178.374 kb on + strandat 178.380 kb on + strand, within Atu6163at 178.425 kb on + strand, within Atu6163at 178.431 kb on - strand, within Atu6163at 178.508 kb on - strand, within Atu6163at 178.512 kb on + strand, within Atu6163at 178.522 kb on - strand, within Atu6163at 178.586 kb on + strand, within Atu6163at 178.586 kb on + strand, within Atu6163at 178.592 kb on + strand, within Atu6163at 178.592 kb on + strand, within Atu6163at 178.594 kb on - strand, within Atu6163at 178.628 kb on - strand, within Atu6163at 178.635 kb on + strand, within Atu6163at 178.747 kb on + strandat 178.747 kb on + strandat 178.755 kb on - strandat 178.755 kb on - strandat 178.787 kb on + strandat 178.787 kb on + strandat 178.834 kb on - strandat 178.837 kb on + strandat 178.882 kb on + strandat 178.883 kb on - strandat 178.890 kb on - strandat 178.890 kb on - strandat 178.905 kb on + strandat 178.940 kb on - strandat 178.988 kb on - strandat 179.041 kb on + strandat 179.041 kb on + strandat 179.117 kb on - strandat 179.203 kb on + strandat 179.203 kb on + strandat 179.208 kb on + strandat 179.216 kb on - strandat 179.248 kb on - strandat 179.300 kb on + strandat 179.300 kb on + strandat 179.300 kb on + strandat 179.300 kb on + strandat 179.308 kb on - strandat 179.308 kb on - strandat 179.308 kb on - strandat 179.320 kb on - strandat 179.339 kb on + strand, within Atu6164at 179.379 kb on - strand, within Atu6164at 179.379 kb on - strand, within Atu6164at 179.379 kb on - strand, within Atu6164at 179.412 kb on - strand, within Atu6164at 179.498 kb on - strand, within Atu6164at 179.501 kb on + strand, within Atu6164at 179.519 kb on - strand, within Atu6164at 179.520 kb on - strand, within Atu6164at 179.545 kb on + strand, within Atu6164at 179.593 kb on - strand, within Atu6164at 179.595 kb on + strand, within Atu6164at 179.598 kb on - strand, within Atu6164at 179.631 kb on + strand, within Atu6164at 179.651 kb on - strand, within Atu6164at 179.720 kb on - strand, within Atu6164at 179.722 kb on + strand, within Atu6164at 179.723 kb on + strand, within Atu6164at 179.731 kb on - strand, within Atu6164

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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177,345 + +0.1
177,352 + +0.1
177,371 + -1.2
177,412 + -0.6
177,412 + -0.1
177,420 - +0.2
177,437 + -1.7
177,437 + -1.0
177,445 - +0.1
177,445 - -0.1
177,479 - Atu6162 0.10 -0.2
177,479 - Atu6162 0.10 -0.3
177,507 + Atu6162 0.14 -1.7
177,543 - Atu6162 0.19 +0.2
177,543 - Atu6162 0.19 -0.1
177,543 - Atu6162 0.19 -0.3
177,543 - Atu6162 0.19 +0.3
177,559 + Atu6162 0.21 +0.9
177,583 - Atu6162 0.25 +0.8
177,600 - Atu6162 0.27 +0.5
177,605 - Atu6162 0.28 +0.6
177,659 - Atu6162 0.35 +0.1
177,685 - Atu6162 0.39 +0.1
177,723 - Atu6162 0.44 -0.8
177,753 + Atu6162 0.49 -0.4
177,753 + Atu6162 0.49 -0.2
177,753 + Atu6162 0.49 -0.2
177,758 + Atu6162 0.49 +0.2
177,766 - Atu6162 0.50 -0.1
177,766 - Atu6162 0.50 -0.0
177,803 + Atu6162 0.56 +0.0
177,811 + Atu6162 0.57 +0.6
177,811 - Atu6162 0.57 +0.8
177,818 + Atu6162 0.58 +0.6
177,826 - Atu6162 0.59 -0.2
177,842 - Atu6162 0.61 -0.1
177,859 + Atu6162 0.64 -0.4
177,861 + Atu6162 0.64 -0.0
177,890 + Atu6162 0.68 -0.2
177,910 + Atu6162 0.71 -0.4
177,917 + Atu6162 0.72 +0.1
177,917 + Atu6162 0.72 -1.2
177,918 - Atu6162 0.72 -0.9
177,922 + Atu6162 0.72 -0.9
177,922 + Atu6162 0.72 +0.1
177,925 - Atu6162 0.73 +0.3
177,925 - Atu6162 0.73 -0.0
177,927 + Atu6162 0.73 +0.3
177,930 - Atu6162 0.74 -1.8
177,930 - Atu6162 0.74 -0.3
177,930 - Atu6162 0.74 -0.4
177,946 - Atu6162 0.76 -0.3
177,946 - Atu6162 0.76 -0.5
177,960 + Atu6162 0.78 -0.2
177,968 - Atu6162 0.79 -0.5
178,017 + Atu6162 0.86 -0.4
178,038 + Atu6162 0.89 -0.5
178,046 - Atu6162 0.90 -1.2
178,111 + +0.2
178,130 + +0.7
178,206 + +0.1
178,214 - -1.1
178,228 + -1.2
178,228 + -0.2
178,228 + -0.6
178,228 + +0.6
178,236 - +0.7
178,247 - -0.3
178,252 + +0.2
178,260 - +0.5
178,260 - +0.1
178,267 + -0.1
178,299 - +0.3
178,314 + +0.1
178,321 - -0.0
178,321 - +0.6
178,324 + +0.2
178,324 + -0.0
178,332 - -0.1
178,332 - +0.1
178,355 - -0.2
178,371 - +0.4
178,374 + -1.3
178,380 + Atu6163 0.10 +0.3
178,425 + Atu6163 0.21 +0.0
178,431 - Atu6163 0.22 -1.0
178,508 - Atu6163 0.40 -0.1
178,512 + Atu6163 0.41 -0.3
178,522 - Atu6163 0.43 +0.0
178,586 + Atu6163 0.58 -0.6
178,586 + Atu6163 0.58 +0.9
178,592 + Atu6163 0.60 -0.1
178,592 + Atu6163 0.60 +0.9
178,594 - Atu6163 0.60 +0.4
178,628 - Atu6163 0.68 -0.1
178,635 + Atu6163 0.70 -0.3
178,747 + +0.9
178,747 + +0.1
178,755 - -0.6
178,755 - -0.9
178,787 + +0.7
178,787 + -0.4
178,834 - +0.5
178,837 + +0.4
178,882 + +0.0
178,883 - +0.1
178,890 - +0.2
178,890 - +0.1
178,905 + -0.3
178,940 - -0.3
178,988 - -0.5
179,041 + +1.3
179,041 + +2.0
179,117 - -0.5
179,203 + -0.9
179,203 + +1.2
179,208 + -0.2
179,216 - +0.6
179,248 - -0.2
179,300 + -0.7
179,300 + +0.9
179,300 + +0.0
179,300 + +0.1
179,308 - -1.5
179,308 - -2.0
179,308 - +1.0
179,320 - -0.8
179,339 + Atu6164 0.11 -1.0
179,379 - Atu6164 0.16 +0.1
179,379 - Atu6164 0.16 +1.1
179,379 - Atu6164 0.16 +0.7
179,412 - Atu6164 0.20 -0.5
179,498 - Atu6164 0.32 -0.1
179,501 + Atu6164 0.33 +0.1
179,519 - Atu6164 0.35 -0.1
179,520 - Atu6164 0.35 -0.4
179,545 + Atu6164 0.39 +0.5
179,593 - Atu6164 0.45 -0.4
179,595 + Atu6164 0.45 +0.6
179,598 - Atu6164 0.46 +0.7
179,631 + Atu6164 0.50 -0.0
179,651 - Atu6164 0.53 -0.2
179,720 - Atu6164 0.63 -0.5
179,722 + Atu6164 0.63 -0.0
179,723 + Atu6164 0.63 +0.5
179,731 - Atu6164 0.64 +0.2

Or see this region's nucleotide sequence