Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3240 and Atu3241 are separated by 52 nucleotides Atu3241 and Atu3242 are separated by 17 nucleotides Atu3242 and Atu3243 are separated by 41 nucleotides
Atu3240: Atu3240 - ROK family transcriptional regulator, at 256,967 to 258,166
Atu3240
Atu3241: Atu3241 - dehydrogenase, at 258,219 to 259,319
Atu3241
Atu3242: Atu3242 - hypothetical protein, at 259,337 to 259,978
Atu3242
Atu3243: Atu3243 - hypothetical protein, at 260,020 to 261,381
Atu3243
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1
2 at 257.285 kb on + strand, within Atu3240 at 257.298 kb on - strand, within Atu3240 at 257.308 kb on + strand, within Atu3240 at 257.321 kb on - strand, within Atu3240 at 257.361 kb on + strand, within Atu3240 at 257.426 kb on - strand, within Atu3240 at 257.469 kb on + strand, within Atu3240 at 257.477 kb on - strand, within Atu3240 at 257.634 kb on + strand, within Atu3240 at 257.676 kb on + strand, within Atu3240 at 257.865 kb on + strand, within Atu3240 at 257.871 kb on + strand, within Atu3240 at 257.909 kb on + strand, within Atu3240 at 257.910 kb on + strand, within Atu3240 at 257.956 kb on + strand, within Atu3240 at 258.013 kb on + strand, within Atu3240 at 258.185 kb on + strand at 258.193 kb on - strand at 258.193 kb on - strand at 258.343 kb on - strand, within Atu3241 at 258.366 kb on - strand, within Atu3241 at 258.455 kb on - strand, within Atu3241 at 258.561 kb on - strand, within Atu3241 at 258.602 kb on + strand, within Atu3241 at 258.670 kb on - strand, within Atu3241 at 258.800 kb on - strand, within Atu3241 at 258.801 kb on + strand, within Atu3241 at 258.903 kb on + strand, within Atu3241 at 258.911 kb on - strand, within Atu3241 at 258.917 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 259.007 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.224 kb on + strand at 259.224 kb on + strand at 259.232 kb on - strand at 259.262 kb on + strand at 259.270 kb on + strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.349 kb on + strand at 259.435 kb on + strand, within Atu3242 at 259.435 kb on + strand, within Atu3242 at 259.442 kb on + strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.486 kb on - strand, within Atu3242 at 259.754 kb on - strand, within Atu3242 at 259.764 kb on - strand, within Atu3242 at 259.941 kb on - strand at 260.024 kb on - strand at 260.078 kb on + strand at 260.089 kb on - strand at 260.098 kb on - strand at 260.193 kb on - strand, within Atu3243
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 257,285 + Atu3240 0.27 -0.3 257,298 - Atu3240 0.28 +0.2 257,308 + Atu3240 0.28 -1.2 257,321 - Atu3240 0.29 -1.3 257,361 + Atu3240 0.33 +0.2 257,426 - Atu3240 0.38 -0.1 257,469 + Atu3240 0.42 +0.2 257,477 - Atu3240 0.42 +0.4 257,634 + Atu3240 0.56 -0.8 257,676 + Atu3240 0.59 -0.3 257,865 + Atu3240 0.75 -0.5 257,871 + Atu3240 0.75 -0.3 257,909 + Atu3240 0.79 -0.5 257,910 + Atu3240 0.79 -0.4 257,956 + Atu3240 0.82 +0.6 258,013 + Atu3240 0.87 -1.6 258,185 + -0.4 258,193 - +0.5 258,193 - -0.1 258,343 - Atu3241 0.11 -0.2 258,366 - Atu3241 0.13 -0.3 258,455 - Atu3241 0.21 +0.3 258,561 - Atu3241 0.31 -1.1 258,602 + Atu3241 0.35 +0.6 258,670 - Atu3241 0.41 +0.0 258,800 - Atu3241 0.53 +0.6 258,801 + Atu3241 0.53 +0.3 258,903 + Atu3241 0.62 +1.7 258,911 - Atu3241 0.63 +0.8 258,917 - Atu3241 0.63 +1.8 258,944 - Atu3241 0.66 -0.3 258,944 - Atu3241 0.66 +0.2 259,007 + Atu3241 0.72 +0.4 259,085 + Atu3241 0.79 +0.7 259,085 + Atu3241 0.79 +0.0 259,093 - Atu3241 0.79 +0.5 259,093 - Atu3241 0.79 +0.2 259,224 + +1.6 259,224 + -0.7 259,232 - -0.0 259,262 + -0.2 259,270 + -0.2 259,278 - +0.8 259,278 - +0.1 259,349 + +1.3 259,435 + Atu3242 0.15 -0.3 259,435 + Atu3242 0.15 +0.3 259,442 + Atu3242 0.16 +0.6 259,443 - Atu3242 0.17 -0.0 259,443 - Atu3242 0.17 -0.7 259,486 - Atu3242 0.23 +0.1 259,754 - Atu3242 0.65 +1.2 259,764 - Atu3242 0.67 -0.3 259,941 - -0.0 260,024 - +0.4 260,078 + -0.3 260,089 - -0.1 260,098 - -1.3 260,193 - Atu3243 0.13 +0.4
Or see this region's nucleotide sequence