Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4964 and PP_4965 are separated by 151 nucleotides PP_4965 and PP_4966 are separated by 251 nucleotides
PP_4964: PP_4964 - D-erythrose 4-phosphate dehydrogenase, at 5,654,487 to 5,655,545
_4964
PP_4965: PP_4965 - transketolase A, at 5,655,697 to 5,657,694
_4965
PP_4966: PP_4966 - transcriptional regulator of methionine metabolism, at 5,657,946 to 5,658,938
_4966
Position (kb) 5655
5656
5657
5658 Strain fitness (log2 ratio) -1
0
1
2
3 at 5654.818 kb on - strand, within PP_4964 at 5654.824 kb on - strand, within PP_4964 at 5654.951 kb on - strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.227 kb on + strand, within PP_4964 at 5655.228 kb on - strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.230 kb on - strand, within PP_4964 at 5655.306 kb on + strand, within PP_4964 at 5657.707 kb on - strand at 5657.720 kb on - strand at 5657.720 kb on - strand at 5657.781 kb on - strand at 5657.801 kb on - strand at 5657.850 kb on + strand at 5657.851 kb on - strand at 5658.034 kb on + strand at 5658.034 kb on + strand at 5658.180 kb on + strand, within PP_4966 at 5658.180 kb on + strand, within PP_4966 at 5658.533 kb on + strand, within PP_4966
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 5,654,818 - PP_4964 0.31 +1.9 5,654,824 - PP_4964 0.32 +0.0 5,654,951 - PP_4964 0.44 +1.9 5,655,007 + PP_4964 0.49 +0.9 5,655,007 + PP_4964 0.49 +0.3 5,655,007 + PP_4964 0.49 +1.3 5,655,008 - PP_4964 0.49 +2.9 5,655,008 - PP_4964 0.49 +1.3 5,655,227 + PP_4964 0.70 +1.9 5,655,228 - PP_4964 0.70 +1.3 5,655,229 + PP_4964 0.70 +2.9 5,655,229 + PP_4964 0.70 +1.0 5,655,229 + PP_4964 0.70 +2.9 5,655,230 - PP_4964 0.70 +2.9 5,655,306 + PP_4964 0.77 +2.9 5,657,707 - -0.4 5,657,720 - -1.1 5,657,720 - +0.2 5,657,781 - +0.5 5,657,801 - -0.8 5,657,850 + +0.4 5,657,851 - +0.8 5,658,034 + -0.2 5,658,034 + +0.3 5,658,180 + PP_4966 0.24 -1.6 5,658,180 + PP_4966 0.24 -0.2 5,658,533 + PP_4966 0.59 -0.4
Or see this region's nucleotide sequence