Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4960 and PP_4961 are separated by 100 nucleotides PP_4961 and PP_4962 are separated by 160 nucleotides PP_4962 and PP_4963 overlap by 1 nucleotides PP_4963 and PP_4964 are separated by 12 nucleotides
PP_4960: PP_4960 - Fructose-bisphosphate aldolase, at 5,651,405 to 5,652,469
_4960
PP_4961: PP_4961 - putative Lipoprotein, at 5,652,570 to 5,652,899
_4961
PP_4962: PP_4962 - conserved exported protein of unknown function, at 5,653,060 to 5,653,311
_4962
PP_4963: PP_4963 - Phosphoglycerate kinase, at 5,653,311 to 5,654,474
_4963
PP_4964: PP_4964 - D-erythrose 4-phosphate dehydrogenase, at 5,654,487 to 5,655,545
_4964
Position (kb) 5653
5654
5655 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5652.620 kb on - strand, within PP_4961 at 5652.710 kb on - strand, within PP_4961 at 5652.960 kb on + strand at 5652.961 kb on - strand at 5652.961 kb on - strand at 5653.050 kb on + strand at 5653.050 kb on + strand at 5653.050 kb on + strand at 5653.051 kb on - strand at 5653.173 kb on - strand, within PP_4962 at 5654.818 kb on - strand, within PP_4964 at 5654.824 kb on - strand, within PP_4964 at 5654.951 kb on - strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.007 kb on + strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.008 kb on - strand, within PP_4964 at 5655.227 kb on + strand, within PP_4964 at 5655.228 kb on - strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.229 kb on + strand, within PP_4964 at 5655.230 kb on - strand, within PP_4964 at 5655.306 kb on + strand, within PP_4964
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 5,652,620 - PP_4961 0.15 -0.6 5,652,710 - PP_4961 0.42 -1.9 5,652,960 + +0.3 5,652,961 - -0.2 5,652,961 - +0.6 5,653,050 + -0.2 5,653,050 + +0.8 5,653,050 + +0.8 5,653,051 - +0.8 5,653,173 - PP_4962 0.45 -1.5 5,654,818 - PP_4964 0.31 +1.9 5,654,824 - PP_4964 0.32 +0.0 5,654,951 - PP_4964 0.44 +1.9 5,655,007 + PP_4964 0.49 +0.9 5,655,007 + PP_4964 0.49 +0.3 5,655,007 + PP_4964 0.49 +1.3 5,655,008 - PP_4964 0.49 +2.9 5,655,008 - PP_4964 0.49 +1.3 5,655,227 + PP_4964 0.70 +1.9 5,655,228 - PP_4964 0.70 +1.3 5,655,229 + PP_4964 0.70 +2.9 5,655,229 + PP_4964 0.70 +1.0 5,655,229 + PP_4964 0.70 +2.9 5,655,230 - PP_4964 0.70 +2.9 5,655,306 + PP_4964 0.77 +2.9
Or see this region's nucleotide sequence