Strain Fitness in Pseudomonas putida KT2440 around PP_2534

Experiment: benzoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2533 and PP_2534 are separated by 159 nucleotidesPP_2534 and PP_2535 are separated by 94 nucleotides PP_2533: PP_2533 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 2,878,010 to 2,879,005 _2533 PP_2534: PP_2534 - Transcriptional regulator, LysR family, at 2,879,165 to 2,880,064 _2534 PP_2535: PP_2535 - putative inner membrane transport protein, at 2,880,159 to 2,881,334 _2535 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -1 0 1at 2878.169 kb on + strand, within PP_2533at 2878.169 kb on + strand, within PP_2533at 2878.274 kb on + strand, within PP_2533at 2878.275 kb on - strand, within PP_2533at 2878.406 kb on - strand, within PP_2533at 2878.970 kb on + strandat 2879.044 kb on + strandat 2879.049 kb on + strandat 2879.167 kb on - strandat 2879.180 kb on + strandat 2879.181 kb on - strandat 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.333 kb on - strand, within PP_2534at 2879.406 kb on - strand, within PP_2534at 2879.408 kb on - strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.435 kb on - strand, within PP_2534at 2879.435 kb on - strand, within PP_2534at 2879.535 kb on + strand, within PP_2534at 2879.536 kb on - strand, within PP_2534at 2879.548 kb on - strand, within PP_2534at 2879.548 kb on - strand, within PP_2534at 2879.657 kb on + strand, within PP_2534at 2879.658 kb on - strand, within PP_2534at 2879.658 kb on - strand, within PP_2534at 2879.863 kb on - strand, within PP_2534at 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.106 kb on - strandat 2880.106 kb on - strandat 2880.128 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.164 kb on + strandat 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.435 kb on + strand, within PP_2535at 2880.436 kb on - strand, within PP_2535at 2880.691 kb on - strand, within PP_2535at 2880.825 kb on + strand, within PP_2535at 2880.826 kb on - strand, within PP_2535at 2880.826 kb on - strand, within PP_2535at 2880.826 kb on - strand, within PP_2535

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic (C)
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2,878,169 + PP_2533 0.16 -1.4
2,878,169 + PP_2533 0.16 +0.3
2,878,274 + PP_2533 0.27 -0.2
2,878,275 - PP_2533 0.27 +0.2
2,878,406 - PP_2533 0.40 +0.0
2,878,970 + +1.2
2,879,044 + -1.2
2,879,049 + +0.1
2,879,167 - -0.3
2,879,180 + +0.6
2,879,181 - -0.6
2,879,281 - PP_2534 0.13 -0.1
2,879,281 - PP_2534 0.13 +0.5
2,879,281 - PP_2534 0.13 -0.0
2,879,281 - PP_2534 0.13 -0.1
2,879,333 - PP_2534 0.19 -0.4
2,879,406 - PP_2534 0.27 +1.0
2,879,408 - PP_2534 0.27 +0.2
2,879,434 + PP_2534 0.30 -0.8
2,879,434 + PP_2534 0.30 -0.6
2,879,434 + PP_2534 0.30 -0.1
2,879,435 - PP_2534 0.30 +0.1
2,879,435 - PP_2534 0.30 -0.5
2,879,535 + PP_2534 0.41 -0.4
2,879,536 - PP_2534 0.41 +0.4
2,879,548 - PP_2534 0.43 -0.3
2,879,548 - PP_2534 0.43 +0.1
2,879,657 + PP_2534 0.55 -0.1
2,879,658 - PP_2534 0.55 -0.4
2,879,658 - PP_2534 0.55 +0.4
2,879,863 - PP_2534 0.78 -1.0
2,880,105 + -0.4
2,880,105 + -1.0
2,880,105 + -0.7
2,880,105 + -0.0
2,880,105 + -0.1
2,880,105 + -0.3
2,880,106 - +0.8
2,880,106 - -0.0
2,880,128 + +0.7
2,880,146 + -0.2
2,880,146 + -0.7
2,880,146 + -0.8
2,880,146 + -0.7
2,880,164 + +0.4
2,880,304 - PP_2535 0.12 +1.3
2,880,304 - PP_2535 0.12 +0.1
2,880,304 - PP_2535 0.12 -0.4
2,880,304 - PP_2535 0.12 -0.0
2,880,435 + PP_2535 0.23 -0.2
2,880,436 - PP_2535 0.24 -0.2
2,880,691 - PP_2535 0.45 -0.5
2,880,825 + PP_2535 0.57 -0.2
2,880,826 - PP_2535 0.57 +0.4
2,880,826 - PP_2535 0.57 +0.8
2,880,826 - PP_2535 0.57 +0.3

Or see this region's nucleotide sequence