Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2533 and PP_2534 are separated by 159 nucleotides PP_2534 and PP_2535 are separated by 94 nucleotides
PP_2533: PP_2533 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 2,878,010 to 2,879,005
_2533
PP_2534: PP_2534 - Transcriptional regulator, LysR family, at 2,879,165 to 2,880,064
_2534
PP_2535: PP_2535 - putative inner membrane transport protein, at 2,880,159 to 2,881,334
_2535
Position (kb)
2879
2880
2881 Strain fitness (log2 ratio)
-1
0
1 at 2878.169 kb on + strand, within PP_2533 at 2878.169 kb on + strand, within PP_2533 at 2878.274 kb on + strand, within PP_2533 at 2878.275 kb on - strand, within PP_2533 at 2878.406 kb on - strand, within PP_2533 at 2878.970 kb on + strand at 2879.044 kb on + strand at 2879.049 kb on + strand at 2879.167 kb on - strand at 2879.180 kb on + strand at 2879.181 kb on - strand at 2879.281 kb on - strand, within PP_2534 at 2879.281 kb on - strand, within PP_2534 at 2879.281 kb on - strand, within PP_2534 at 2879.281 kb on - strand, within PP_2534 at 2879.333 kb on - strand, within PP_2534 at 2879.406 kb on - strand, within PP_2534 at 2879.408 kb on - strand, within PP_2534 at 2879.434 kb on + strand, within PP_2534 at 2879.434 kb on + strand, within PP_2534 at 2879.434 kb on + strand, within PP_2534 at 2879.435 kb on - strand, within PP_2534 at 2879.435 kb on - strand, within PP_2534 at 2879.535 kb on + strand, within PP_2534 at 2879.536 kb on - strand, within PP_2534 at 2879.548 kb on - strand, within PP_2534 at 2879.548 kb on - strand, within PP_2534 at 2879.657 kb on + strand, within PP_2534 at 2879.658 kb on - strand, within PP_2534 at 2879.658 kb on - strand, within PP_2534 at 2879.863 kb on - strand, within PP_2534 at 2880.105 kb on + strand at 2880.105 kb on + strand at 2880.105 kb on + strand at 2880.105 kb on + strand at 2880.105 kb on + strand at 2880.105 kb on + strand at 2880.106 kb on - strand at 2880.106 kb on - strand at 2880.128 kb on + strand at 2880.146 kb on + strand at 2880.146 kb on + strand at 2880.146 kb on + strand at 2880.146 kb on + strand at 2880.164 kb on + strand at 2880.304 kb on - strand, within PP_2535 at 2880.304 kb on - strand, within PP_2535 at 2880.304 kb on - strand, within PP_2535 at 2880.304 kb on - strand, within PP_2535 at 2880.435 kb on + strand, within PP_2535 at 2880.436 kb on - strand, within PP_2535 at 2880.691 kb on - strand, within PP_2535 at 2880.825 kb on + strand, within PP_2535 at 2880.826 kb on - strand, within PP_2535 at 2880.826 kb on - strand, within PP_2535 at 2880.826 kb on - strand, within PP_2535
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 2,878,169 + PP_2533 0.16 -1.4 2,878,169 + PP_2533 0.16 +0.3 2,878,274 + PP_2533 0.27 -0.2 2,878,275 - PP_2533 0.27 +0.2 2,878,406 - PP_2533 0.40 +0.0 2,878,970 + +1.2 2,879,044 + -1.2 2,879,049 + +0.1 2,879,167 - -0.3 2,879,180 + +0.6 2,879,181 - -0.6 2,879,281 - PP_2534 0.13 -0.1 2,879,281 - PP_2534 0.13 +0.5 2,879,281 - PP_2534 0.13 -0.0 2,879,281 - PP_2534 0.13 -0.1 2,879,333 - PP_2534 0.19 -0.4 2,879,406 - PP_2534 0.27 +1.0 2,879,408 - PP_2534 0.27 +0.2 2,879,434 + PP_2534 0.30 -0.8 2,879,434 + PP_2534 0.30 -0.6 2,879,434 + PP_2534 0.30 -0.1 2,879,435 - PP_2534 0.30 +0.1 2,879,435 - PP_2534 0.30 -0.5 2,879,535 + PP_2534 0.41 -0.4 2,879,536 - PP_2534 0.41 +0.4 2,879,548 - PP_2534 0.43 -0.3 2,879,548 - PP_2534 0.43 +0.1 2,879,657 + PP_2534 0.55 -0.1 2,879,658 - PP_2534 0.55 -0.4 2,879,658 - PP_2534 0.55 +0.4 2,879,863 - PP_2534 0.78 -1.0 2,880,105 + -0.4 2,880,105 + -1.0 2,880,105 + -0.7 2,880,105 + -0.0 2,880,105 + -0.1 2,880,105 + -0.3 2,880,106 - +0.8 2,880,106 - -0.0 2,880,128 + +0.7 2,880,146 + -0.2 2,880,146 + -0.7 2,880,146 + -0.8 2,880,146 + -0.7 2,880,164 + +0.4 2,880,304 - PP_2535 0.12 +1.3 2,880,304 - PP_2535 0.12 +0.1 2,880,304 - PP_2535 0.12 -0.4 2,880,304 - PP_2535 0.12 -0.0 2,880,435 + PP_2535 0.23 -0.2 2,880,436 - PP_2535 0.24 -0.2 2,880,691 - PP_2535 0.45 -0.5 2,880,825 + PP_2535 0.57 -0.2 2,880,826 - PP_2535 0.57 +0.4 2,880,826 - PP_2535 0.57 +0.8 2,880,826 - PP_2535 0.57 +0.3
Or see this region's nucleotide sequence