Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0337 and PP_0338 are separated by 307 nucleotides PP_0338 and PP_0339 are separated by 13 nucleotides
PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056
_0337
PP_0338: PP_0338 - AceF-S-acetyldihydrolipoate, at 406,364 to 408,004
_0338
PP_0339: PP_0339 - Pyruvate dehydrogenase E1 component, at 408,018 to 410,663
_0339
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -2
-1
0
1 at 405.434 kb on + strand, within PP_0337 at 405.497 kb on + strand, within PP_0337 at 405.522 kb on + strand, within PP_0337 at 405.523 kb on - strand, within PP_0337 at 405.716 kb on + strand, within PP_0337 at 405.716 kb on + strand, within PP_0337 at 405.717 kb on - strand, within PP_0337 at 405.770 kb on + strand, within PP_0337 at 405.771 kb on - strand, within PP_0337 at 405.783 kb on - strand, within PP_0337 at 405.783 kb on - strand, within PP_0337 at 405.831 kb on - strand at 405.932 kb on + strand at 405.933 kb on - strand at 406.001 kb on - strand at 406.001 kb on - strand at 406.305 kb on + strand at 406.305 kb on + strand at 406.365 kb on + strand at 406.779 kb on + strand, within PP_0338 at 406.779 kb on + strand, within PP_0338 at 407.163 kb on + strand, within PP_0338 at 408.006 kb on + strand at 408.069 kb on - strand at 408.271 kb on + strand at 408.507 kb on + strand, within PP_0339 at 408.547 kb on + strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.628 kb on + strand at 408.701 kb on - strand, within PP_0339 at 408.712 kb on + strand, within PP_0339 at 408.713 kb on - strand, within PP_0339 at 408.713 kb on - strand at 408.867 kb on - strand, within PP_0339 at 408.931 kb on + strand, within PP_0339 at 408.932 kb on - strand, within PP_0339 at 408.932 kb on - strand, within PP_0339
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 405,434 + PP_0337 0.77 +0.8 405,497 + PP_0337 0.79 -0.0 405,522 + PP_0337 0.80 -0.4 405,523 - PP_0337 0.80 +0.4 405,716 + PP_0337 0.87 +0.6 405,716 + PP_0337 0.87 -0.3 405,717 - PP_0337 0.87 -0.5 405,770 + PP_0337 0.89 +0.4 405,771 - PP_0337 0.89 -0.7 405,783 - PP_0337 0.90 +0.0 405,783 - PP_0337 0.90 +0.1 405,831 - -1.2 405,932 + -0.2 405,933 - -0.2 406,001 - -0.1 406,001 - -0.3 406,305 + -0.4 406,305 + -0.9 406,365 + +0.4 406,779 + PP_0338 0.25 -1.1 406,779 + PP_0338 0.25 -1.5 407,163 + PP_0338 0.49 -0.3 408,006 + -1.2 408,069 - -1.6 408,271 + -0.6 408,507 + PP_0339 0.18 -1.0 408,547 + PP_0339 0.20 -1.5 408,626 - PP_0339 0.23 -1.5 408,626 - PP_0339 0.23 -0.4 408,628 + -0.6 408,701 - PP_0339 0.26 -2.0 408,712 + PP_0339 0.26 -1.5 408,713 - PP_0339 0.26 -1.3 408,713 - -1.1 408,867 - PP_0339 0.32 -0.7 408,931 + PP_0339 0.35 -0.1 408,932 - PP_0339 0.35 +1.4 408,932 - PP_0339 0.35 -1.6
Or see this region's nucleotide sequence