Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0413 and PP_0414 are separated by 10 nucleotides PP_0414 and PP_0415 are separated by 150 nucleotides PP_0415 and PP_0416 overlap by 4 nucleotides PP_0416 and PP_0417 are separated by 69 nucleotides
PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959
_0413
PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797
_0414
PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622
_0415
PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437
_0416
PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988
_0417
Position (kb) 503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 503.012 kb on + strand at 503.012 kb on + strand at 503.012 kb on + strand at 503.024 kb on - strand at 503.142 kb on - strand, within PP_0414 at 503.349 kb on - strand, within PP_0414 at 503.349 kb on - strand, within PP_0414 at 503.437 kb on + strand, within PP_0414 at 503.437 kb on + strand, within PP_0414 at 503.438 kb on - strand, within PP_0414 at 503.468 kb on + strand, within PP_0414 at 503.878 kb on + strand at 503.879 kb on - strand at 503.909 kb on + strand at 503.957 kb on + strand at 503.957 kb on + strand at 504.896 kb on - strand, within PP_0416 at 504.896 kb on - strand, within PP_0416 at 504.896 kb on - strand, within PP_0416 at 504.916 kb on - strand, within PP_0416 at 505.222 kb on + strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.229 kb on - strand, within PP_0416 at 505.230 kb on + strand, within PP_0416 at 505.231 kb on - strand, within PP_0416 at 505.481 kb on + strand at 505.481 kb on + strand at 505.481 kb on + strand at 505.481 kb on + strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.555 kb on - strand at 505.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 502,982 + +0.2 502,982 + -0.2 502,982 + -0.6 502,982 + -0.2 502,982 + -0.1 502,983 - +0.1 502,983 - -0.3 502,983 - +0.0 502,983 - +0.1 502,983 - -0.2 502,983 - -0.6 502,983 - -0.3 502,983 - -0.2 503,012 + -0.1 503,012 + +0.0 503,012 + +0.2 503,024 - -0.3 503,142 - PP_0414 0.21 +1.2 503,349 - PP_0414 0.46 +0.0 503,349 - PP_0414 0.46 -0.7 503,437 + PP_0414 0.56 +0.7 503,437 + PP_0414 0.56 -0.3 503,438 - PP_0414 0.57 +0.2 503,468 + PP_0414 0.60 -0.0 503,878 + +0.1 503,879 - +0.1 503,909 + +1.2 503,957 + -0.8 503,957 + +1.0 504,896 - PP_0416 0.34 +0.3 504,896 - PP_0416 0.34 +1.1 504,896 - PP_0416 0.34 +1.1 504,916 - PP_0416 0.36 +0.5 505,222 + PP_0416 0.74 -0.0 505,223 - PP_0416 0.74 +0.1 505,223 - PP_0416 0.74 +0.0 505,223 - PP_0416 0.74 +0.3 505,229 - PP_0416 0.74 +0.1 505,230 + PP_0416 0.75 -0.1 505,231 - PP_0416 0.75 +0.5 505,481 + +0.2 505,481 + +1.8 505,481 + -0.3 505,481 + +0.6 505,482 - -2.7 505,482 - -3.4 505,482 - -4.2 505,482 - -4.7 505,555 - -1.2 505,607 - -3.9
Or see this region's nucleotide sequence