Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5031 and Atu5032 are separated by 195 nucleotides Atu5032 and Atu5033 are separated by 31 nucleotides Atu5033 and Atu5034 are separated by 594 nucleotides Atu5034 and Atu5035 are separated by 74 nucleotides
Atu5031: Atu5031 - hypothetical protein, at 31,458 to 32,576
Atu5031
Atu5032: Atu5032 - hypothetical protein, at 32,772 to 33,533
Atu5032
Atu5033: Atu5033 - hypothetical protein, at 33,565 to 34,635
Atu5033
Atu5034: Atu5034 - hypothetical protein, at 35,230 to 35,457
Atu5034
Atu5035: Atu5035 - hypothetical protein, at 35,532 to 36,428
Atu5035
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1
2
3 at 32.588 kb on + strand at 32.588 kb on + strand at 32.596 kb on - strand at 32.630 kb on + strand at 32.657 kb on + strand at 32.768 kb on + strand at 32.778 kb on - strand at 32.783 kb on + strand at 32.783 kb on + strand at 32.783 kb on + strand at 32.783 kb on + strand at 32.791 kb on - strand at 32.791 kb on - strand at 32.791 kb on - strand at 32.791 kb on - strand at 32.836 kb on + strand at 32.858 kb on + strand, within Atu5032 at 32.858 kb on + strand, within Atu5032 at 32.866 kb on - strand, within Atu5032 at 32.866 kb on - strand, within Atu5032 at 32.928 kb on - strand, within Atu5032 at 32.928 kb on - strand, within Atu5032 at 32.957 kb on - strand, within Atu5032 at 32.957 kb on - strand, within Atu5032 at 33.015 kb on + strand, within Atu5032 at 33.023 kb on - strand, within Atu5032 at 33.023 kb on - strand, within Atu5032 at 33.192 kb on + strand, within Atu5032 at 33.192 kb on + strand, within Atu5032 at 33.192 kb on + strand, within Atu5032 at 33.200 kb on - strand, within Atu5032 at 33.200 kb on - strand, within Atu5032 at 33.200 kb on - strand, within Atu5032 at 33.219 kb on - strand, within Atu5032 at 33.224 kb on - strand, within Atu5032 at 33.269 kb on + strand, within Atu5032 at 33.303 kb on - strand, within Atu5032 at 33.337 kb on + strand, within Atu5032 at 33.340 kb on + strand, within Atu5032 at 33.340 kb on - strand, within Atu5032 at 33.342 kb on + strand, within Atu5032 at 33.342 kb on + strand, within Atu5032 at 33.342 kb on + strand, within Atu5032 at 33.347 kb on + strand, within Atu5032 at 33.347 kb on + strand, within Atu5032 at 33.347 kb on + strand, within Atu5032 at 33.347 kb on + strand, within Atu5032 at 33.348 kb on - strand, within Atu5032 at 33.350 kb on - strand, within Atu5032 at 33.350 kb on - strand, within Atu5032 at 33.350 kb on - strand, within Atu5032 at 33.350 kb on - strand, within Atu5032 at 33.350 kb on - strand, within Atu5032 at 33.355 kb on - strand, within Atu5032 at 33.395 kb on + strand, within Atu5032 at 33.433 kb on + strand, within Atu5032 at 33.453 kb on - strand, within Atu5032 at 33.462 kb on + strand at 33.500 kb on + strand at 33.529 kb on + strand at 33.534 kb on + strand at 33.537 kb on - strand at 33.542 kb on - strand at 33.629 kb on + strand at 33.637 kb on - strand at 33.684 kb on - strand, within Atu5033 at 33.727 kb on + strand, within Atu5033 at 33.809 kb on - strand, within Atu5033 at 33.924 kb on + strand, within Atu5033 at 33.924 kb on + strand, within Atu5033 at 33.944 kb on + strand, within Atu5033 at 33.977 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.024 kb on + strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.032 kb on - strand, within Atu5033 at 34.050 kb on - strand, within Atu5033 at 34.073 kb on - strand, within Atu5033 at 34.097 kb on + strand, within Atu5033 at 34.097 kb on + strand, within Atu5033 at 34.097 kb on + strand, within Atu5033 at 34.105 kb on - strand, within Atu5033 at 34.111 kb on - strand, within Atu5033 at 34.194 kb on + strand, within Atu5033 at 34.313 kb on - strand, within Atu5033 at 34.342 kb on - strand, within Atu5033 at 34.366 kb on - strand, within Atu5033 at 34.370 kb on + strand, within Atu5033 at 34.375 kb on + strand, within Atu5033 at 34.378 kb on - strand, within Atu5033 at 34.414 kb on - strand, within Atu5033 at 34.425 kb on - strand, within Atu5033 at 34.466 kb on - strand, within Atu5033 at 34.471 kb on - strand, within Atu5033 at 34.512 kb on - strand, within Atu5033 at 34.519 kb on - strand, within Atu5033 at 34.554 kb on - strand at 34.556 kb on + strand at 34.576 kb on + strand at 34.584 kb on - strand at 34.604 kb on - strand at 34.625 kb on + strand at 34.633 kb on - strand at 34.633 kb on - strand at 34.744 kb on + strand at 34.744 kb on + strand at 34.749 kb on + strand at 34.749 kb on + strand at 34.752 kb on - strand at 34.752 kb on - strand at 34.752 kb on - strand at 34.862 kb on + strand at 35.023 kb on + strand at 35.052 kb on - strand at 35.068 kb on + strand at 35.068 kb on + strand at 35.077 kb on - strand at 35.082 kb on - strand at 35.088 kb on - strand at 35.134 kb on + strand at 35.134 kb on + strand at 35.142 kb on - strand at 35.142 kb on - strand at 35.142 kb on - strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.173 kb on + strand at 35.178 kb on + strand at 35.178 kb on + strand at 35.178 kb on + strand at 35.178 kb on + strand at 35.178 kb on + strand at 35.181 kb on - strand at 35.181 kb on - strand at 35.181 kb on - strand at 35.186 kb on - strand at 35.186 kb on - strand at 35.191 kb on - strand at 35.208 kb on + strand at 35.216 kb on - strand at 35.231 kb on - strand at 35.269 kb on + strand, within Atu5034 at 35.375 kb on - strand, within Atu5034 at 35.415 kb on - strand, within Atu5034 at 35.494 kb on + strand at 35.517 kb on + strand at 35.541 kb on + strand at 35.563 kb on + strand at 35.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 32,588 + -0.2 32,588 + +0.1 32,596 - +0.6 32,630 + +1.4 32,657 + +0.3 32,768 + +1.2 32,778 - +0.2 32,783 + -1.3 32,783 + -0.3 32,783 + +0.3 32,783 + -1.6 32,791 - -0.1 32,791 - +0.0 32,791 - -0.4 32,791 - +1.0 32,836 + +0.3 32,858 + Atu5032 0.11 -0.2 32,858 + Atu5032 0.11 -0.8 32,866 - Atu5032 0.12 +0.2 32,866 - Atu5032 0.12 -0.6 32,928 - Atu5032 0.20 +0.9 32,928 - Atu5032 0.20 -0.3 32,957 - Atu5032 0.24 +0.1 32,957 - Atu5032 0.24 -0.5 33,015 + Atu5032 0.32 +0.2 33,023 - Atu5032 0.33 -0.0 33,023 - Atu5032 0.33 -0.1 33,192 + Atu5032 0.55 -0.2 33,192 + Atu5032 0.55 +0.1 33,192 + Atu5032 0.55 +0.8 33,200 - Atu5032 0.56 +0.4 33,200 - Atu5032 0.56 -0.2 33,200 - Atu5032 0.56 +0.4 33,219 - Atu5032 0.59 -0.2 33,224 - Atu5032 0.59 +0.3 33,269 + Atu5032 0.65 -0.7 33,303 - Atu5032 0.70 +1.0 33,337 + Atu5032 0.74 -0.3 33,340 + Atu5032 0.75 +0.9 33,340 - Atu5032 0.75 -0.3 33,342 + Atu5032 0.75 +0.3 33,342 + Atu5032 0.75 -0.5 33,342 + Atu5032 0.75 -0.1 33,347 + Atu5032 0.75 -1.5 33,347 + Atu5032 0.75 +0.4 33,347 + Atu5032 0.75 +0.6 33,347 + Atu5032 0.75 -0.6 33,348 - Atu5032 0.76 -0.2 33,350 - Atu5032 0.76 -0.3 33,350 - Atu5032 0.76 +0.1 33,350 - Atu5032 0.76 +0.1 33,350 - Atu5032 0.76 -0.8 33,350 - Atu5032 0.76 +0.2 33,355 - Atu5032 0.77 +0.3 33,395 + Atu5032 0.82 -0.4 33,433 + Atu5032 0.87 -0.3 33,453 - Atu5032 0.89 +0.6 33,462 + +0.8 33,500 + -0.8 33,529 + -0.9 33,534 + +0.0 33,537 - -0.6 33,542 - +0.0 33,629 + -0.0 33,637 - +1.0 33,684 - Atu5033 0.11 +0.1 33,727 + Atu5033 0.15 -0.8 33,809 - Atu5033 0.23 +1.2 33,924 + Atu5033 0.34 -0.8 33,924 + Atu5033 0.34 +0.2 33,944 + Atu5033 0.35 +0.0 33,977 + Atu5033 0.38 -0.9 34,024 + Atu5033 0.43 -0.3 34,024 + Atu5033 0.43 -1.0 34,024 + Atu5033 0.43 -1.4 34,024 + Atu5033 0.43 +0.0 34,024 + Atu5033 0.43 +1.7 34,024 + Atu5033 0.43 -0.4 34,024 + Atu5033 0.43 +2.1 34,024 + Atu5033 0.43 +0.2 34,024 + Atu5033 0.43 +0.3 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 +0.6 34,024 + Atu5033 0.43 -0.3 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 +0.4 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 -0.2 34,024 + Atu5033 0.43 +1.1 34,032 - Atu5033 0.44 +1.2 34,032 - Atu5033 0.44 -0.2 34,032 - Atu5033 0.44 -0.2 34,032 - Atu5033 0.44 +0.3 34,032 - Atu5033 0.44 +0.6 34,032 - Atu5033 0.44 +0.2 34,032 - Atu5033 0.44 -1.0 34,032 - Atu5033 0.44 -0.1 34,032 - Atu5033 0.44 -0.2 34,032 - Atu5033 0.44 +0.7 34,032 - Atu5033 0.44 +0.3 34,032 - Atu5033 0.44 -1.1 34,032 - Atu5033 0.44 +0.3 34,032 - Atu5033 0.44 -1.0 34,032 - Atu5033 0.44 +0.1 34,032 - Atu5033 0.44 -0.7 34,032 - Atu5033 0.44 +0.5 34,050 - Atu5033 0.45 +0.9 34,073 - Atu5033 0.47 -0.4 34,097 + Atu5033 0.50 -0.2 34,097 + Atu5033 0.50 -0.3 34,097 + Atu5033 0.50 -0.0 34,105 - Atu5033 0.50 +1.2 34,111 - Atu5033 0.51 +0.1 34,194 + Atu5033 0.59 +0.6 34,313 - Atu5033 0.70 -0.1 34,342 - Atu5033 0.73 +1.0 34,366 - Atu5033 0.75 +0.6 34,370 + Atu5033 0.75 -0.6 34,375 + Atu5033 0.76 -1.6 34,378 - Atu5033 0.76 -0.4 34,414 - Atu5033 0.79 +1.4 34,425 - Atu5033 0.80 -0.1 34,466 - Atu5033 0.84 +0.4 34,471 - Atu5033 0.85 -0.6 34,512 - Atu5033 0.88 +0.2 34,519 - Atu5033 0.89 +0.1 34,554 - +0.4 34,556 + -0.6 34,576 + -0.3 34,584 - +0.2 34,604 - -0.2 34,625 + +0.2 34,633 - -0.1 34,633 - +1.1 34,744 + +0.3 34,744 + +0.8 34,749 + +0.2 34,749 + -0.3 34,752 - +0.5 34,752 - -0.3 34,752 - -0.4 34,862 + -1.0 35,023 + +0.1 35,052 - +0.3 35,068 + +0.1 35,068 + +1.5 35,077 - -1.1 35,082 - +0.1 35,088 - +0.5 35,134 + +0.3 35,134 + +2.0 35,142 - +0.4 35,142 - -0.0 35,142 - -1.4 35,173 + -0.1 35,173 + -0.6 35,173 + +0.3 35,173 + +0.6 35,173 + -0.6 35,173 + +0.9 35,173 + -0.2 35,173 + +1.2 35,178 + +0.1 35,178 + -0.4 35,178 + -0.3 35,178 + +0.3 35,178 + -0.1 35,181 - -0.4 35,181 - +0.7 35,181 - +0.8 35,186 - -0.8 35,186 - -0.6 35,191 - -0.0 35,208 + -1.0 35,216 - -0.0 35,231 - +0.1 35,269 + Atu5034 0.17 +0.4 35,375 - Atu5034 0.64 +2.8 35,415 - Atu5034 0.81 +1.4 35,494 + -0.0 35,517 + +1.7 35,541 + +0.0 35,563 + +1.5 35,571 - +0.7
Or see this region's nucleotide sequence